version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
pdxH
Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) (By similarity) (214 aa)
(Burkholderia ambifaria)
Predicted Functional Partners:
Bamb_1046
Pyridoxal kinase (286 aa)
•    •• 0.989
Bamb_1013
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction [...] (258 aa)
  •  •• 0.983
Bamb_2858
DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic a [...] (284 aa)
•       0.771
Bamb_0577
Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reacti [...] (413 aa)
•     • 0.659
Bamb_2615
UBA/THIF-type NAD/FAD binding protein (285 aa)
•       0.643
Bamb_4387
protein of unknown function DUF107 (525 aa)
•       0.640
Bamb_2153
Single-stranded-DNA-specific exonuclease RecJ (565 aa)
•       0.619
coq7
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Oxygenase that introduces the hydr [...] (208 aa)
•       0.616
Bamb_2730
FAD dependent oxidoreductase (507 aa)
•       0.595
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1 [...] (451 aa)
•       0.584
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.
Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:
additional (white) nodes         or: network depth