version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
ccmA
Cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex ccmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system (By similarity) (205 aa)
(Escherichia coli 536)
Predicted Functional Partners:
ccmB
cytochrome c-type biogenesis protein CcmB (220 aa)
     0.997
ccmE
Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type [...] (159 aa)
     0.981
ccmG
Thiol-disulfide interchange protein DsbE (209 aa)
     0.976
ccmF
cytochrome c-type biogenesis protein CcmF (647 aa)
     0.973
nrfF
formate-dependent nitrite reductase complex NrfF subunit precursor (127 aa)
    0.935
napC
Nitrate reductase, cytochrome c-type,periplasmic (200 aa)
      0.931
napF
Ferredoxin-type protein, putative role in electron transfer to periplasmic nitrate reductase (N [...] (164 aa)
      0.914
ccmH
cytochrome c-type biogenesis protein CcmH precursor (294 aa)
     0.912
napG
Ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate r [...] (231 aa)
      0.906
napB
Nitrate reductase, small, cytochrome C550 subunit, periplasmic (149 aa)
       0.885
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth