version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (By similarity) (238 aa)
(Alcanivorax borkumensis)
Predicted Functional Partners:
ABO_2578
Nucleoside-triphosphatase (196 aa)
      0.977
pyrE
Orotate phosphoribosyltransferase (222 aa)
      0.819
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis (263 aa)
       0.800
ABO_0205
Putative uncharacterized protein (287 aa)
       0.798
ABO_2580
Coproporphyrinogen oxidase (394 aa)
       0.796
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (By similarity) (207 aa)
       0.683
thyA
Thymidylate synthase; Provides the sole de novo source of dTMP for DNA biosynthesis (By similar [...] (277 aa)
       0.679
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and [...] (87 aa)
       0.659
ABO_0208
Putative uncharacterized protein (210 aa)
       0.632
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the AT [...] (344 aa)
       0.605
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth