version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
rtcA
Probable RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps- (A) adenylation of the enzyme by ATP; (B) the enzyme acts on RNA-N3'P to produce RNA-N3'PP5'A; (C) a non catalytic nucleophilic attack by the adjacent 2'hydroxyl on the phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity) (355 aa)
(Acidobacterium sp.)
Predicted Functional Partners:
Acid345_1273
protein of unknown function UPF0027 (409 aa)
• •   • 0.986
Acid345_1274
Regulator of RNA terminal phosphate cyclase (566 aa)
• •   • 0.970
Acid345_2389
DNA polymerase X family protein (584 aa)
•       0.732
Acid345_1938
Putative uncharacterized protein (199 aa)
  •     0.705
Acid345_4540
Ribose-phosphate pyrophosphokinase (359 aa)
•       0.586
Acid345_0927
protein of unknown function DUF1175 (283 aa)
  •     0.545
Acid345_0623
Carbamoyltransferase (578 aa)
•       0.525
Acid345_0551
CDP-alcohol phosphatidyltransferase (223 aa)
•       0.449
Acid345_3623
Citrate transporter (408 aa)
•       0.448
Acid345_0870
Formate dehydrogenase gamma subunit (222 aa)
•       0.436
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.
Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:
additional (white) nodes         or: network depth