trmD protein (Baumannia cicadellinicola) - STRING interaction network

This is the evidence view. Different line colors represent the types of evidence for the association.




confidence	evidence	actions	interactive	advanced	more	less	save

Your Input:
	trmD	tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (By similarity) (252 aa)
		(Baumannia cicadellinicola)
Predicted Functional Partners:
	rplS	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface a [...] (115 aa)	•		•	•	0.994
	rimM	Ribosome maturation factor rimM; An accessory protein needed during the final step in the assem [...] (175 aa)	•		•	•	0.987
	rpsP	30S ribosomal protein S16 (88 aa)	•		•	•	0.983
	ispF	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Converts 4-diphosphocytidyl-2-C-methyl-D [...] (158 aa)	•	•			0.932
	ffh	Signal recognition particle protein (449 aa)	•			•	0.914
	rpsM	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts sever [...] (118 aa)	•		•	•	0.882
	infA	Translation initiation factor IF-1; No specific function has so far been attributed to this ini [...] (72 aa)	•		•	•	0.866
	rplQ	50S ribosomal protein L17 (128 aa)	•		•		0.865
	rpsK	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several dispa [...] (129 aa)	•		•		0.848
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcrip [...] (327 aa)	•		•		0.781

Views:

Info & Parameters ...

Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

required confidence (score):

interactors shown:

or custom value:

or custom limit:

additional (white) nodes		or: network depth