version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
ccmA
Cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex ccmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system (By similarity) (200 aa)
(Rhodopseudomonas palustris HaA2)
Predicted Functional Partners:
RPB_0293
Putative heme exporter protein B (Heme ABC transporter membrane protein), cytochrome c biogenes [...] (222 aa)
     0.929
RPB_0366
Heme exporter protein CcmC (244 aa)
     0.926
ccmE
Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type [...] (165 aa)
     0.867
RPB_3448
Cytochrome c-type biogenesis protein CcmF (660 aa)
     0.864
RPB_3447
Cytochrome C biogenesis protein (166 aa)
      0.826
RPB_0365
Periplasmic protein thiol (197 aa)
     0.822
acnA
aconitate hydratase 1 (920 aa)
       0.619
RPB_0290
Protein of unknown function DUF1223 (277 aa)
       0.462
RPB_0343
Protein of unknown function DUF1025 (133 aa)
       0.416
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth