version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
ccmA
Cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex ccmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system (By similarity) (217 aa)
(Magnetospirillum magneticum)
Predicted Functional Partners:
amb4179
ABC-type transport system involved in cytochrome c biogenesis, permease component (221 aa)
     0.993
amb4197
ABC-type transport system involved in cytochrome c biogenesis, permease component (283 aa)
     0.960
ccmE
Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type [...] (148 aa)
    0.940
amb4200
Cytochrome c biogenesis factor (659 aa)
     0.936
amb4201
Thiol-disulfide isomerase and thioredoxins (180 aa)
     0.930
amb4202
Cytochrome c-type biogenesis protein cycL precursor (193 aa)
     0.891
amb4181
Putative uncharacterized protein (1013 aa)
       0.670
amb2692
Ferredoxin (176 aa)
      0.651
amb2493
Phosphatidate cytidylyltransferase (262 aa)
       0.589
amb2689
Ferredoxin (275 aa)
      0.584
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth