version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (By similarity) (219 aa)
(Desulfovibrio desulfuricans)
Predicted Functional Partners:
ribH
6,7-dimethyl-8-ribityllumazine synthase; Riboflavin synthase is a bifunctional enzyme complex c [...] (156 aa)
• •  •• 0.995
Dde_2435
Riboflavin synthase, alpha subunit (224 aa)
• •   • 0.951
Dde_2434
5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine [...] (363 aa)
• •     0.889
Dde_2436
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase (407 aa)
• •  •••0.877
smpB
SsrA-binding protein; Binds specifically to the ssrA RNA (tmRNA) and is required for stable ass [...] (155 aa)
•       0.527
Dde_3607
Tryptophanyl-tRNA synthetase (329 aa)
•       0.485
glyA
Serine hydroxymethyltransferase; Interconversion of serine and glycine (412 aa)
•       0.484
Dde_2512
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongatio [...] (235 aa)
•       0.482
nusB
N utilization substance protein B homolog; Involved in the transcription termination process (B [...] (154 aa)
•       0.463
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across t [...] (502 aa)
•       0.463
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.
Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:
additional (white) nodes         or: network depth