version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
ccmA
Cytochrome c biogenesis ATP-binding export protein ccmA; Part of the ABC transporter complex ccmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system (By similarity) (204 aa)
(Dechloromonas aromatica)
Predicted Functional Partners:
Daro_3992
Cytochrome c-type biogenesis protein CcmB (222 aa)
     0.994
Daro_3993
Cytochrome c-type biogenesis protein CcmC (248 aa)
     0.993
ccmE
Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type [...] (153 aa)
    0.990
Daro_3996
Cytochrome c-type biogenesis protein CcmF (664 aa)
    0.988
Daro_3998
Cytochrome C biogenesis protein (162 aa)
    0.984
Daro_3997
Periplasmic protein thiol-disulfide oxidoreductase DsbE (194 aa)
     0.983
Daro_3999
TPR repeat (279 aa)
      0.914
Daro_4000
Periplasmic nitrate reductase maturation protein NapF (159 aa)
      0.903
Daro_3994
Heme exporter protein D (66 aa)
      0.857
Daro_1405
TPR repeat (399 aa)
      0.730
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth