version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) (By similarity) (277 aa)
(Campylobacter jejuni RM1221)
Predicted Functional Partners:
rpsA
30S ribosomal protein S1 (556 aa)
••      0.988
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclo [...] (357 aa)
  •  •• 0.985
aroA
3-phosphoshikimate 1-carboxyvinyltransferase (428 aa)
•       0.961
ispA
Geranyltranstransferase (281 aa)
•    •  0.947
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C [...] (615 aa)
• •   • 0.925
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and [...] (356 aa)
• •   • 0.898
CJE0976
phenylalanyl-tRNA synthetase alpha subunit (330 aa)
•       0.869
pheT
phenylalanyl-tRNA synthetase beta subunit (773 aa)
•       0.869
ispDF
Bifunctional enzyme ispD/ispF; Bifunctional enzyme that catalyzes the formation of 4- diphospho [...] (371 aa)
  •   • 0.835
yph
GTP-binding protein-like protein; GTPase of unknown physiological role (460 aa)
•     • 0.777
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.
Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:
additional (white) nodes         or: network depth