version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
VVA1334
Peptide deformylase 1; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity) (168 aa)
(Vibrio vulnificus YJ016)
Predicted Functional Partners:
fmt
Methionyl-tRNA formyltransferase; Modifies the free amino group of the aminoacyl moiety of meth [...] (315 aa)
   0.956
VV2985
Pentose-5-phosphate-3-epimerase (222 aa)
       0.689
VV3012
primosome assembly protein PriA (739 aa)
       0.684
fmv
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at positi [...] (426 aa)
       0.681
VVA1336
Putative uncharacterized protein VVA1336 (46 aa)
       0.666
VVA1335
Putative uncharacterized protein VVA1335 (55 aa)
       0.666
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP (By similarity) (207 aa)
      0.659
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionin [...] (384 aa)
      0.660
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a proce [...] (208 aa)
      0.619
coaBC
Coenzyme A biosynthesis bifunctional protein coaBC; Catalyzes two steps in the biosynthesis of [...] (414 aa)
       0.603
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth