trmD protein (Blochmannia floridanus) - STRING interaction network

This is the evidence view. Different line colors represent the types of evidence for the association.




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Your Input:
	trmD	tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (By similarity) (248 aa)
		(Blochmannia floridanus)
Predicted Functional Partners:
	rplS	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface a [...] (117 aa)	•	•	•	0.993
	rimM	Ribosome maturation factor rimM; An accessory protein needed during the final step in the assem [...] (185 aa)	•	•	•	0.985
	rpsP	30S ribosomal subunit protein S16 (82 aa)	•	•	•	0.971
	ffh	4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA (457 aa)	•		•	0.898
	rpsM	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts sever [...] (118 aa)	•	•	•	0.882
	infA	Translation initiation factor IF-1; No specific function has so far been attributed to this ini [...] (72 aa)	•	•	•	0.867
	rplQ	50S ribosomal subunit protein L17 (125 aa)	•	•		0.864
	rpsK	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several dispa [...] (130 aa)	•	•		0.847
	rnhB	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By simil [...] (205 aa)	•			0.799
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcrip [...] (331 aa)	•	•		0.781

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Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:

Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining

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