version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
acsF
Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME) (By similarity) (356 aa)
(Synechococcus sp. 8102)
Predicted Functional Partners:
SYNW2287
Possible magnesium protoprophyrin IX methyltransferase (237 aa)
     0.990
chlB
Light-independent protochlorophyllide reductase subunit B; Uses Mg-ATP and reduced ferredoxin t [...] (524 aa)
      0.902
SYNW2400
Short-chain dehydrogenase/reductase (SDR) superfamily (305 aa)
       0.899
SYNW1726
Light dependent protochlorophyllide oxido-reductase (316 aa)
       0.899
SYNW1129
Possible light-dependent protochlorophyllide oxido-reductase (311 aa)
       0.899
chlN
Light-independent protochlorophyllide reductase subunit N; Uses Mg-ATP and reduced ferredoxin t [...] (425 aa)
      0.896
tldD
putative modulator of DNA gyrase; TldD (469 aa)
       0.864
pmbA
Possible modulator of DNA gyrase (454 aa)
       0.864
fmt
Methionyl-tRNA formyltransferase; Modifies the free amino group of the aminoacyl moiety of meth [...] (338 aa)
       0.864
chlP
Geranylgeranyl hydrogenase (450 aa)
      0.761
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes         or: network depth