version_number_image
 
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs (By similarity) (232 aa)
(Agrobacterium tumefaciens)
Predicted Functional Partners:
rimM
Ribosome maturation factor rimM; An accessory protein needed during the final step in the assem [...] (179 aa)
•  •  • 0.987
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface a [...] (179 aa)
• ••  • 0.976
rpsP
30S ribosomal protein S16 (126 aa)
•  •  • 0.961
infA
Translation initiation factor IF-1; No specific function has so far been attributed to this ini [...] (99 aa)
• ••  • 0.911
smpB
SsrA-binding protein; Binds specifically to the ssrA RNA (tmRNA) and is required for stable ass [...] (160 aa)
• •     0.897
ffh
Signal recognition particle protein (523 aa)
•     • 0.893
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts sever [...] (122 aa)
•  •  • 0.868
ispDF
Bifunctional enzyme ispD/ispF; Bifunctional enzyme that catalyzes the formation of 4- diphospho [...] (400 aa)
••      0.850
rplQ
50S ribosomal protein L17 (141 aa)
•  •    0.850
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribos [...] (231 aa)
• ••    0.840
 
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Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.
Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:
additional (white) nodes         or: network depth