STRINGSTRING
F24M12.110 F24M12.110 F13E7.16 F13E7.16 MTG13.4 MTG13.4 T6K21.30 T6K21.30 T22A6.120 T22A6.120 AHB1 AHB1 AHB2 AHB2 PDV2 PDV2 ARF6 ARF6 SYD SYD BUG22 BUG22
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
F24M12.110Probable methyltransferase PMT27; Belongs to the methyltransferase superfamily. (895 aa)    
Predicted Functional Partners:
F13E7.16
RING/FYVE/PHD zinc finger superfamily protein.
    
 0.583
MTG13.4
RING/FYVE/PHD zinc finger superfamily protein.
    
 0.583
T6K21.30
Uncharacterized protein AT4g17850.
    
 0.583
T22A6.120
MACPF domain-containing protein At4g24290; Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.
  
  
 0.520
AHB1
Non-symbiotic hemoglobin 1; May not function as an oxygen storage or transport protein, but might act as an oxygen sensor or play a role in electron transfer, possibly to a bound oxygen molecule. Has an unusually high affinity for O(2) because of a very low dissociation constant; Belongs to the plant globin family.
    
 0.460
AHB2
Non-symbiotic hemoglobin 2; May not function as an oxygen storage or transport protein, but might act as an oxygen sensor or play a role in electron transfer, possibly to a bound oxygen molecule. Has a low affinity for O(2); Belongs to the plant globin family.
    
 0.460
PDV2
Plastid division protein PDV2; Component of the plastid division machinery. Required to mediate the recruitment of ARC5 at the midplastid constriction site in the cytoplasm. Relays plastid division site position between stroma and outer surface via interactions with the cytoplasmic ARC5 and the inner membrane ARC6 that recruits stromal FtsZ ring.
    
 0.460
ARF6
Auxin response factor 6; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8.
  
     0.460
SYD
Chromatin structure-remodeling complex protein SYD; Catalytic component of the chromatin structure-remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls stem cell fate via the transcription regulation of WUS in the shoot apical meristem, by modulating its promoter. LFY-dependent repressor of the meristem identity switch from vegetative to reproductive development probably by modulating chromatin state. Involved in the regulation of floral homeotic gene expression in response to environmental stimuli. Required for carpel and ovule d [...]
    
 0.450
BUG22
Cilia/flagella-associated protein.
    
 
 0.450
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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