RCOM_1580550 protein (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCOM_1580550

WRKY transcription factor, putative. (370 aa)

Predicted Functional Partners:

RCOM_0921470

0.495

RCOM_1471640

0.457

RCOM_0921060

0.449

RCOM_1510540

0.448

RCOM_0340230

0.436

RCOM_1465160

0.424

RCOM_0004450

0.421

RCOM_1081860

0.417

RCOM_1175560

0.417

RCOM_0960400

0.408

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0004450	RCOM_0960400	B9T7A4	B9SE91	Zinc finger protein, putative.	AP2/ERF domain-containing protein.	0.456
RCOM_0004450	RCOM_1175560	B9T7A4	B9RW30	Zinc finger protein, putative.	AP2/ERF domain-containing protein.	0.455
RCOM_0004450	RCOM_1465160	B9T7A4	B9RLD3	Zinc finger protein, putative.	Ocs element-binding factor, putative.	0.439
RCOM_0004450	RCOM_1580550	B9T7A4	B9RIL9	Zinc finger protein, putative.	WRKY transcription factor, putative.	0.421
RCOM_0340230	RCOM_0960400	B9T0T3	B9SE91	Zinc finger protein, putative.	AP2/ERF domain-containing protein.	0.481
RCOM_0340230	RCOM_1081860	B9T0T3	B9RMM4	Zinc finger protein, putative.	Uncharacterized protein.	0.471
RCOM_0340230	RCOM_1175560	B9T0T3	B9RW30	Zinc finger protein, putative.	AP2/ERF domain-containing protein.	0.513
RCOM_0340230	RCOM_1465160	B9T0T3	B9RLD3	Zinc finger protein, putative.	Ocs element-binding factor, putative.	0.486
RCOM_0340230	RCOM_1580550	B9T0T3	B9RIL9	Zinc finger protein, putative.	WRKY transcription factor, putative.	0.436
RCOM_0921060	RCOM_1580550	B9RNW3	B9RIL9	WRKY domain-containing protein.	WRKY transcription factor, putative.	0.449
RCOM_0921470	RCOM_1580550	B9RNW4	B9RIL9	WRKY transcription factor, putative.	WRKY transcription factor, putative.	0.495
RCOM_0960400	RCOM_0004450	B9SE91	B9T7A4	AP2/ERF domain-containing protein.	Zinc finger protein, putative.	0.456
RCOM_0960400	RCOM_0340230	B9SE91	B9T0T3	AP2/ERF domain-containing protein.	Zinc finger protein, putative.	0.481
RCOM_0960400	RCOM_1465160	B9SE91	B9RLD3	AP2/ERF domain-containing protein.	Ocs element-binding factor, putative.	0.495
RCOM_0960400	RCOM_1471640	B9SE91	B9RLX7	AP2/ERF domain-containing protein.	Zinc finger protein, putative.	0.423
RCOM_0960400	RCOM_1510540	B9SE91	B9RB20	AP2/ERF domain-containing protein.	Zinc finger protein, putative.	0.445
RCOM_0960400	RCOM_1580550	B9SE91	B9RIL9	AP2/ERF domain-containing protein.	WRKY transcription factor, putative.	0.408
RCOM_1081860	RCOM_0340230	B9RMM4	B9T0T3	Uncharacterized protein.	Zinc finger protein, putative.	0.471
RCOM_1081860	RCOM_1465160	B9RMM4	B9RLD3	Uncharacterized protein.	Ocs element-binding factor, putative.	0.426
RCOM_1081860	RCOM_1471640	B9RMM4	B9RLX7	Uncharacterized protein.	Zinc finger protein, putative.	0.418