RCOM_0682370 protein (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCOM_0682370

AP2/ERF domain-containing protein. (247 aa)

Predicted Functional Partners:

RCOM_1592450

0.517

RCOM_1015170

0.517

RCOM_1674080

0.501

RCOM_0716180

0.500

RCOM_0419560

0.493

RcWRI1

0.492

RCOM_1467360

0.489

RCOM_0092380

0.486

RCOM_0293420

0.462

RCOM_1493780

0.455

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0092380	RCOM_0293420	B9SL83	B9SWH3	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.493
RCOM_0092380	RCOM_0682370	B9SL83	B9RTA2	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.486
RCOM_0092380	RCOM_0716180	B9SL83	B9SBD9	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.489
RCOM_0092380	RCOM_1015170	B9SL83	B9S9B1	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.476
RCOM_0092380	RCOM_1493780	B9SL83	B9RQK6	AP2/ERF domain-containing protein.	Photosystem I reaction center subunit VI, chloroplast, putative.	0.451
RCOM_0092380	RCOM_1592450	B9SL83	B9R7J4	AP2/ERF domain-containing protein.	Zinc finger protein, putative.	0.489
RCOM_0092380	RCOM_1674080	B9SL83	B9RBC0	AP2/ERF domain-containing protein.	Zinc finger protein, putative.	0.434
RCOM_0293420	RCOM_0092380	B9SWH3	B9SL83	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.493
RCOM_0293420	RCOM_0682370	B9SWH3	B9RTA2	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.462
RCOM_0293420	RCOM_0716180	B9SWH3	B9SBD9	Uncharacterized protein.	Dof-type domain-containing protein.	0.526
RCOM_0293420	RCOM_1015170	B9SWH3	B9S9B1	Uncharacterized protein.	Dof-type domain-containing protein.	0.500
RCOM_0293420	RCOM_1493780	B9SWH3	B9RQK6	Uncharacterized protein.	Photosystem I reaction center subunit VI, chloroplast, putative.	0.531
RCOM_0293420	RCOM_1592450	B9SWH3	B9R7J4	Uncharacterized protein.	Zinc finger protein, putative.	0.515
RCOM_0293420	RCOM_1674080	B9SWH3	B9RBC0	Uncharacterized protein.	Zinc finger protein, putative.	0.485
RCOM_0293420	RcWRI1	B9SWH3	B9SH36	Uncharacterized protein.	AP2-type transcription factor.	0.405
RCOM_0419560	RCOM_0682370	B9SDJ2	B9RTA2	Zinc finger protein, putative.	AP2/ERF domain-containing protein.	0.493
RCOM_0682370	RCOM_0092380	B9RTA2	B9SL83	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.486
RCOM_0682370	RCOM_0293420	B9RTA2	B9SWH3	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.462
RCOM_0682370	RCOM_0419560	B9RTA2	B9SDJ2	AP2/ERF domain-containing protein.	Zinc finger protein, putative.	0.493
RCOM_0682370	RCOM_0716180	B9RTA2	B9SBD9	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.500