RCOM_1353410 protein (Ricinus communis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCOM_1353410

Nucleic acid binding protein, putative. (320 aa)

Predicted Functional Partners:

RCOM_0679520

0.508

RCOM_1596950

0.504

RCOM_1599800

0.489

RCOM_1019520

0.489

RCOM_0302130

0.489

RCOM_0352020

0.482

RCOM_0974680

0.477

RCOM_1080950

0.471

RCOM_0553190

0.463

RCOM_1434120

0.459

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0302130	RCOM_0679520	B9T0J7	B9RSY8	Transcription factor, putative.	Uncharacterized protein.	0.935
RCOM_0302130	RCOM_1019520	B9T0J7	B9RWH6	Transcription factor, putative.	Transcription factor, putative.	0.780
RCOM_0302130	RCOM_1353410	B9T0J7	B9S0D6	Transcription factor, putative.	Nucleic acid binding protein, putative.	0.489
RCOM_0302130	RCOM_1599800	B9T0J7	B9R8H2	Transcription factor, putative.	Transcription factor, putative.	0.841
RCOM_0352020	RCOM_1080950	B9T8J2	B9RMI3	Uncharacterized protein.	C2 NT-type domain-containing protein.	0.480
RCOM_0352020	RCOM_1353410	B9T8J2	B9S0D6	Uncharacterized protein.	Nucleic acid binding protein, putative.	0.482
RCOM_0352020	RCOM_1596950	B9T8J2	B9R858	Uncharacterized protein.	DUF4005 domain-containing protein.	0.489
RCOM_0553190	RCOM_1353410	B9SGI1	B9S0D6	BRASSINAZOLE-RESISTANT 1 protein, putative.	Nucleic acid binding protein, putative.	0.463
RCOM_0553190	RCOM_1434120	B9SGI1	B9RFE9	BRASSINAZOLE-RESISTANT 1 protein, putative.	F-box domain-containing protein.	0.491
RCOM_0553190	RCOM_1596950	B9SGI1	B9R858	BRASSINAZOLE-RESISTANT 1 protein, putative.	DUF4005 domain-containing protein.	0.408
RCOM_0679520	RCOM_0302130	B9RSY8	B9T0J7	Uncharacterized protein.	Transcription factor, putative.	0.935
RCOM_0679520	RCOM_1019520	B9RSY8	B9RWH6	Uncharacterized protein.	Transcription factor, putative.	0.922
RCOM_0679520	RCOM_1080950	B9RSY8	B9RMI3	Uncharacterized protein.	C2 NT-type domain-containing protein.	0.626
RCOM_0679520	RCOM_1353410	B9RSY8	B9S0D6	Uncharacterized protein.	Nucleic acid binding protein, putative.	0.508
RCOM_0679520	RCOM_1599800	B9RSY8	B9R8H2	Uncharacterized protein.	Transcription factor, putative.	0.935
RCOM_0974680	RCOM_1353410	B9SXW9	B9S0D6	Uncharacterized protein.	Nucleic acid binding protein, putative.	0.477
RCOM_1019520	RCOM_0302130	B9RWH6	B9T0J7	Transcription factor, putative.	Transcription factor, putative.	0.780
RCOM_1019520	RCOM_0679520	B9RWH6	B9RSY8	Transcription factor, putative.	Uncharacterized protein.	0.922
RCOM_1019520	RCOM_1353410	B9RWH6	B9S0D6	Transcription factor, putative.	Nucleic acid binding protein, putative.	0.489
RCOM_1019520	RCOM_1599800	B9RWH6	B9R8H2	Transcription factor, putative.	Transcription factor, putative.	0.781