Csa_5G160180 protein (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Csa_5G160180

NAC domain-containing protein. (329 aa)

Predicted Functional Partners:

Csa_5G184300

0.504

Csa_5G011720

0.503

Csa_6G008730

0.492

PYL1

0.488

Csa_3G354490

0.488

Csa_3G150010

0.487

Csa_3G042390

0.482

Csa_2G023880

0.472

Csa_6G524670

0.469

Csa_2G034500

0.468

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_2G023880	Csa_2G034500	A0A0A0LLS3	A0A0A0LK00	Lipoxygenase.	Uncharacterized protein.	0.512
Csa_2G023880	Csa_3G042390	A0A0A0LLS3	A0A0A0L5V9	Lipoxygenase.	AP2/ERF domain-containing protein.	0.504
Csa_2G023880	Csa_3G354490	A0A0A0LLS3	A0A0A0L798	Lipoxygenase.	Uncharacterized protein.	0.542
Csa_2G023880	Csa_5G011720	A0A0A0LLS3	A0A0A0KMG9	Lipoxygenase.	Uncharacterized protein.	0.491
Csa_2G023880	Csa_5G160180	A0A0A0LLS3	A0A0A0KKJ4	Lipoxygenase.	NAC domain-containing protein.	0.472
Csa_2G023880	Csa_5G184300	A0A0A0LLS3	A0A0A0KNY6	Lipoxygenase.	Methyltransferase.	0.425
Csa_2G023880	Csa_6G008730	A0A0A0LLS3	A0A0A0KBG8	Lipoxygenase.	Methyltransferase.	0.419
Csa_2G023880	Csa_6G524670	A0A0A0LLS3	A0A0A0KI77	Lipoxygenase.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.488
Csa_2G023880	PYL1	A0A0A0LLS3	A0A0A0KQ73	Lipoxygenase.	Uncharacterized protein.	0.536
Csa_2G034500	Csa_2G023880	A0A0A0LK00	A0A0A0LLS3	Uncharacterized protein.	Lipoxygenase.	0.512
Csa_2G034500	Csa_3G042390	A0A0A0LK00	A0A0A0L5V9	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.492
Csa_2G034500	Csa_3G354490	A0A0A0LK00	A0A0A0L798	Uncharacterized protein.	Uncharacterized protein.	0.525
Csa_2G034500	Csa_5G011720	A0A0A0LK00	A0A0A0KMG9	Uncharacterized protein.	Uncharacterized protein.	0.482
Csa_2G034500	Csa_5G160180	A0A0A0LK00	A0A0A0KKJ4	Uncharacterized protein.	NAC domain-containing protein.	0.468
Csa_2G034500	Csa_6G524670	A0A0A0LK00	A0A0A0KI77	Uncharacterized protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.506
Csa_2G034500	PYL1	A0A0A0LK00	A0A0A0KQ73	Uncharacterized protein.	Uncharacterized protein.	0.533
Csa_3G042390	Csa_2G023880	A0A0A0L5V9	A0A0A0LLS3	AP2/ERF domain-containing protein.	Lipoxygenase.	0.504
Csa_3G042390	Csa_2G034500	A0A0A0L5V9	A0A0A0LK00	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.492
Csa_3G042390	Csa_3G150010	A0A0A0L5V9	A0A0A0L8U9	AP2/ERF domain-containing protein.	BHLH domain-containing protein.	0.459
Csa_3G042390	Csa_3G354490	A0A0A0L5V9	A0A0A0L798	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.519