Csa_6G296960 protein (Cucumis sativus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Csa_6G296960

Uncharacterized protein. (497 aa)

Predicted Functional Partners:

Csa_6G128610

0.674

Csa_4G022940

0.638

Csa_3G185140

0.631

Csa_7G388450

0.572

Csa_6G424520

0.572

Csa_5G156130

0.538

Csa_5G172810

0.538

Csa_3G734310

0.538

Csa_1G505950

0.513

Csa_4G192030

0.491

Your Current Organism:

Cucumis sativus

NCBI taxonomy Id: 3659
Other names: C. sativus, Cucumis sativus L., cucumber, cucumbers

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Csa_1G505950	Csa_4G192030	A0A0A0LUU2	A0A0A0L1B8	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.441
Csa_1G505950	Csa_6G296960	A0A0A0LUU2	A0A0A0KCQ8	Dof-type domain-containing protein.	Uncharacterized protein.	0.513
Csa_3G185140	Csa_4G022940	A0A0A0L8W2	A0A0A0KUD2	Uncharacterized protein.	Uncharacterized protein.	0.662
Csa_3G185140	Csa_5G156130	A0A0A0L8W2	A0A0A0KKN1	Uncharacterized protein.	Uncharacterized protein.	0.540
Csa_3G185140	Csa_5G172810	A0A0A0L8W2	A0A0A0KRQ9	Uncharacterized protein.	Uncharacterized protein.	0.540
Csa_3G185140	Csa_6G128610	A0A0A0L8W2	A0A0A0KG68	Uncharacterized protein.	Uncharacterized protein.	0.631
Csa_3G185140	Csa_6G296960	A0A0A0L8W2	A0A0A0KCQ8	Uncharacterized protein.	Uncharacterized protein.	0.631
Csa_3G734310	Csa_6G296960	A0A0A0LAK9	A0A0A0KCQ8	Dof-type domain-containing protein.	Uncharacterized protein.	0.538
Csa_4G022940	Csa_3G185140	A0A0A0KUD2	A0A0A0L8W2	Uncharacterized protein.	Uncharacterized protein.	0.662
Csa_4G022940	Csa_5G156130	A0A0A0KUD2	A0A0A0KKN1	Uncharacterized protein.	Uncharacterized protein.	0.573
Csa_4G022940	Csa_5G172810	A0A0A0KUD2	A0A0A0KRQ9	Uncharacterized protein.	Uncharacterized protein.	0.573
Csa_4G022940	Csa_6G128610	A0A0A0KUD2	A0A0A0KG68	Uncharacterized protein.	Uncharacterized protein.	0.639
Csa_4G022940	Csa_6G296960	A0A0A0KUD2	A0A0A0KCQ8	Uncharacterized protein.	Uncharacterized protein.	0.638
Csa_4G192030	Csa_1G505950	A0A0A0L1B8	A0A0A0LUU2	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.441
Csa_4G192030	Csa_6G296960	A0A0A0L1B8	A0A0A0KCQ8	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.491
Csa_5G156130	Csa_3G185140	A0A0A0KKN1	A0A0A0L8W2	Uncharacterized protein.	Uncharacterized protein.	0.540
Csa_5G156130	Csa_4G022940	A0A0A0KKN1	A0A0A0KUD2	Uncharacterized protein.	Uncharacterized protein.	0.573
Csa_5G156130	Csa_6G128610	A0A0A0KKN1	A0A0A0KG68	Uncharacterized protein.	Uncharacterized protein.	0.538
Csa_5G156130	Csa_6G296960	A0A0A0KKN1	A0A0A0KCQ8	Uncharacterized protein.	Uncharacterized protein.	0.538
Csa_5G172810	Csa_3G185140	A0A0A0KRQ9	A0A0A0L8W2	Uncharacterized protein.	Uncharacterized protein.	0.540