CAARF8 protein (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CAARF8

Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (504 aa)

Predicted Functional Partners:

LOC101489008

0.577

NAC66

0.549

LOC105852523

0.536

LOC101506914

0.526

LOC101515083

0.526

LOC105851094

0.523

NAC60

0.519

LOC101501775

0.518

LOC101497053

0.514

LOC101510691

0.514

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAARF8	LOC101489008	A0A1S2XKQ4	A0A1S3ECE8	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Auxin-induced protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.577
CAARF8	LOC101497053	A0A1S2XKQ4	A0A1S2XVA0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.514
CAARF8	LOC101501775	A0A1S2XKQ4	A0A1S2Z1L1	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	NAC domain-containing protein 41-like.	0.518
CAARF8	LOC101506914	A0A1S2XKQ4	A0A1S2YW48	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.526
CAARF8	LOC101510691	A0A1S2XKQ4	A0A1S2Z633	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.514
CAARF8	LOC101515083	A0A1S2XKQ4	A0A1S3E093	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.526
CAARF8	LOC105851094	A0A1S2XKQ4	A0A1S3EF65	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Ethylene-responsive transcription factor-like protein At4g13040.	0.523
CAARF8	LOC105852523	A0A1S2XKQ4	A0A1S3EG21	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein LOC105852523.	0.536
CAARF8	NAC60	A0A1S2XKQ4	A0A1S2YUU5	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	NAC domain-containing protein 2.	0.519
CAARF8	NAC66	A0A1S2XKQ4	A0A1S2Z557	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	NAC domain-containing protein 86.	0.549
LOC101489008	CAARF8	A0A1S3ECE8	A0A1S2XKQ4	Auxin-induced protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.577
LOC101497053	CAARF8	A0A1S2XVA0	A0A1S2XKQ4	Methyltransferase.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.514
LOC101497053	LOC101501775	A0A1S2XVA0	A0A1S2Z1L1	Methyltransferase.	NAC domain-containing protein 41-like.	0.539
LOC101497053	LOC105851094	A0A1S2XVA0	A0A1S3EF65	Methyltransferase.	Ethylene-responsive transcription factor-like protein At4g13040.	0.532
LOC101497053	LOC105852523	A0A1S2XVA0	A0A1S3EG21	Methyltransferase.	Uncharacterized protein LOC105852523.	0.523
LOC101497053	NAC60	A0A1S2XVA0	A0A1S2YUU5	Methyltransferase.	NAC domain-containing protein 2.	0.539
LOC101501775	CAARF8	A0A1S2Z1L1	A0A1S2XKQ4	NAC domain-containing protein 41-like.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.518
LOC101501775	LOC101497053	A0A1S2Z1L1	A0A1S2XVA0	NAC domain-containing protein 41-like.	Methyltransferase.	0.539
LOC101501775	LOC101506914	A0A1S2Z1L1	A0A1S2YW48	NAC domain-containing protein 41-like.	Methyltransferase.	0.544
LOC101501775	LOC101510691	A0A1S2Z1L1	A0A1S2Z633	NAC domain-containing protein 41-like.	Methyltransferase.	0.540

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Textmining

Neighborhood

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About