LOC101499896 protein (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101499896

NF-X1-type zinc finger protein NFXL2. (868 aa)

Predicted Functional Partners:

LOC101493980

0.731

LOC101493477

0.584

LOC101493645

0.576

LOC101508045

0.546

LOC101499860

0.521

LOC101511312

0.521

LOC101512901

0.504

LOC101492631

0.485

LOC101514831

0.485

LOC101502798

0.485

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101492631	LOC101493645	A0A1S2XVG8	A0A1S2Y7T2	60S ribosomal protein L21-1-like.	60S ribosomal protein L5-like.	0.999
LOC101492631	LOC101493980	A0A1S2XVG8	A0A1S2XBZ6	60S ribosomal protein L21-1-like.	Peptidylprolyl isomerase.	0.728
LOC101492631	LOC101499860	A0A1S2XVG8	A0A1S2XUW0	60S ribosomal protein L21-1-like.	40S ribosomal protein S15-4; Belongs to the universal ribosomal protein uS19 family.	0.991
LOC101492631	LOC101499896	A0A1S2XVG8	A0A1S2Y8E7	60S ribosomal protein L21-1-like.	NF-X1-type zinc finger protein NFXL2.	0.485
LOC101492631	LOC101502798	A0A1S2XVG8	A0A1S2YRY8	60S ribosomal protein L21-1-like.	60S ribosomal protein L37a.	0.999
LOC101492631	LOC101508045	A0A1S2XVG8	A0A1S2Y4G4	60S ribosomal protein L21-1-like.	60S ribosomal protein L13a-4; Belongs to the universal ribosomal protein uL13 family.	0.999
LOC101492631	LOC101511312	A0A1S2XVG8	A0A1S2XWR2	60S ribosomal protein L21-1-like.	40S ribosomal protein S15-4-like; Belongs to the universal ribosomal protein uS19 family.	0.991
LOC101492631	LOC101512901	A0A1S2XVG8	A0A1S2YVU9	60S ribosomal protein L21-1-like.	60S ribosomal protein L5.	0.998
LOC101492631	LOC101514831	A0A1S2XVG8	A0A1S2YR52	60S ribosomal protein L21-1-like.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
LOC101493477	LOC101499896	A0A1S2YX88	A0A1S2Y8E7	Protein CDC73 homolog.	NF-X1-type zinc finger protein NFXL2.	0.584
LOC101493645	LOC101492631	A0A1S2Y7T2	A0A1S2XVG8	60S ribosomal protein L5-like.	60S ribosomal protein L21-1-like.	0.999
LOC101493645	LOC101493980	A0A1S2Y7T2	A0A1S2XBZ6	60S ribosomal protein L5-like.	Peptidylprolyl isomerase.	0.655
LOC101493645	LOC101499860	A0A1S2Y7T2	A0A1S2XUW0	60S ribosomal protein L5-like.	40S ribosomal protein S15-4; Belongs to the universal ribosomal protein uS19 family.	0.996
LOC101493645	LOC101499896	A0A1S2Y7T2	A0A1S2Y8E7	60S ribosomal protein L5-like.	NF-X1-type zinc finger protein NFXL2.	0.576
LOC101493645	LOC101502798	A0A1S2Y7T2	A0A1S2YRY8	60S ribosomal protein L5-like.	60S ribosomal protein L37a.	0.999
LOC101493645	LOC101508045	A0A1S2Y7T2	A0A1S2Y4G4	60S ribosomal protein L5-like.	60S ribosomal protein L13a-4; Belongs to the universal ribosomal protein uL13 family.	0.999
LOC101493645	LOC101511312	A0A1S2Y7T2	A0A1S2XWR2	60S ribosomal protein L5-like.	40S ribosomal protein S15-4-like; Belongs to the universal ribosomal protein uS19 family.	0.996
LOC101493645	LOC101512901	A0A1S2Y7T2	A0A1S2YVU9	60S ribosomal protein L5-like.	60S ribosomal protein L5.	0.924
LOC101493645	LOC101514831	A0A1S2Y7T2	A0A1S2YR52	60S ribosomal protein L5-like.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
LOC101493980	LOC101492631	A0A1S2XBZ6	A0A1S2XVG8	Peptidylprolyl isomerase.	60S ribosomal protein L21-1-like.	0.728