LOC101491915 protein (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101491915

Scarecrow-like protein 33; Belongs to the GRAS family. (358 aa)

Predicted Functional Partners:

LOC101492663

0.497

LOC101498914

0.495

LOC101506502

0.486

LOC101495472

0.485

LOC101496874

0.476

LOC101501956

0.475

NAC30

0.472

LOC113787055

0.472

LOC101493004

0.468

LOC101510071

0.468

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101491915	LOC101492663	A0A1S2YMS7	A0A1S2YBZ8	Scarecrow-like protein 33; Belongs to the GRAS family.	Uncharacterized protein LOC101492663.	0.497
LOC101491915	LOC101493004	A0A1S2YMS7	A0A1S2YEV7	Scarecrow-like protein 33; Belongs to the GRAS family.	Protein BASIC PENTACYSTEINE4-like.	0.468
LOC101491915	LOC101495472	A0A1S2YMS7	A0A1S2YFN9	Scarecrow-like protein 33; Belongs to the GRAS family.	NDR1/HIN1-like protein 13.	0.485
LOC101491915	LOC101496874	A0A1S2YMS7	A0A1S2Y806	Scarecrow-like protein 33; Belongs to the GRAS family.	BURP domain-containing protein BNM2A-like.	0.476
LOC101491915	LOC101498914	A0A1S2YMS7	A0A3Q7WW61	Scarecrow-like protein 33; Belongs to the GRAS family.	Heavy metal-associated isoprenylated plant protein 8.	0.495
LOC101491915	LOC101501956	A0A1S2YMS7	A0A1S2YU20	Scarecrow-like protein 33; Belongs to the GRAS family.	Uncharacterized protein LOC101501956.	0.475
LOC101491915	LOC101506502	A0A1S2YMS7	A0A1S2XUA4	Scarecrow-like protein 33; Belongs to the GRAS family.	Uncharacterized GPI-anchored protein At5g19250-like.	0.486
LOC101491915	LOC101510071	A0A1S2YMS7	A0A3Q7XD95	Scarecrow-like protein 33; Belongs to the GRAS family.	Transcription repressor OFP5.	0.468
LOC101491915	LOC113787055	A0A1S2YMS7	A0A3Q7Y1G2	Scarecrow-like protein 33; Belongs to the GRAS family.	Uncharacterized protein LOC113787055.	0.472
LOC101491915	NAC30	A0A1S2YMS7	A0A1S2XYZ6	Scarecrow-like protein 33; Belongs to the GRAS family.	NAC domain containing protein 50.	0.472
LOC101492663	LOC101491915	A0A1S2YBZ8	A0A1S2YMS7	Uncharacterized protein LOC101492663.	Scarecrow-like protein 33; Belongs to the GRAS family.	0.497
LOC101492663	LOC101495472	A0A1S2YBZ8	A0A1S2YFN9	Uncharacterized protein LOC101492663.	NDR1/HIN1-like protein 13.	0.404
LOC101492663	LOC101498914	A0A1S2YBZ8	A0A3Q7WW61	Uncharacterized protein LOC101492663.	Heavy metal-associated isoprenylated plant protein 8.	0.448
LOC101492663	LOC113787055	A0A1S2YBZ8	A0A3Q7Y1G2	Uncharacterized protein LOC101492663.	Uncharacterized protein LOC113787055.	0.495
LOC101493004	LOC101491915	A0A1S2YEV7	A0A1S2YMS7	Protein BASIC PENTACYSTEINE4-like.	Scarecrow-like protein 33; Belongs to the GRAS family.	0.468
LOC101493004	LOC101496874	A0A1S2YEV7	A0A1S2Y806	Protein BASIC PENTACYSTEINE4-like.	BURP domain-containing protein BNM2A-like.	0.456
LOC101495472	LOC101491915	A0A1S2YFN9	A0A1S2YMS7	NDR1/HIN1-like protein 13.	Scarecrow-like protein 33; Belongs to the GRAS family.	0.485
LOC101495472	LOC101492663	A0A1S2YFN9	A0A1S2YBZ8	NDR1/HIN1-like protein 13.	Uncharacterized protein LOC101492663.	0.404
LOC101495472	LOC101506502	A0A1S2YFN9	A0A1S2XUA4	NDR1/HIN1-like protein 13.	Uncharacterized GPI-anchored protein At5g19250-like.	0.414
LOC101495472	LOC101510071	A0A1S2YFN9	A0A3Q7XD95	NDR1/HIN1-like protein 13.	Transcription repressor OFP5.	0.402