LOC101498138 protein (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101498138

LOB domain-containing protein 37 isoform X1. (234 aa)

Predicted Functional Partners:

LOC101511947

0.528

NAC22

0.526

LOC101497300

0.513

NAC02

0.510

NAC27

0.510

NAC3

0.506

NAC43

0.505

LOC101497356

0.504

NAC47

0.500

NAC24

0.498

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101497300	LOC101497356	A0A1S2Y5V5	A0A1S3DYX3	F-box protein At2g26850-like.	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	0.508
LOC101497300	LOC101498138	A0A1S2Y5V5	A0A1S2YYA3	F-box protein At2g26850-like.	LOB domain-containing protein 37 isoform X1.	0.513
LOC101497300	LOC101511947	A0A1S2Y5V5	A0A1S2XS74	F-box protein At2g26850-like.	Uncharacterized protein LOC101511947.	0.531
LOC101497300	NAC02	A0A1S2Y5V5	A0A1S2XCB0	F-box protein At2g26850-like.	NAC transcription factor NAM-B2.	0.483
LOC101497300	NAC22	A0A1S2Y5V5	A0A1S2XN03	F-box protein At2g26850-like.	NAC domain-containing protein 100 isoform X1.	0.533
LOC101497300	NAC24	A0A1S2Y5V5	A0A1S2XSZ5	F-box protein At2g26850-like.	NAC transcription factor 47.	0.528
LOC101497300	NAC27	A0A1S2Y5V5	A0A1S2XSR2	F-box protein At2g26850-like.	NAC transcription factor 32.	0.501
LOC101497300	NAC3	A0A1S2Y5V5	D0PWB2	F-box protein At2g26850-like.	NAC family transcription factor 3.	0.468
LOC101497300	NAC43	A0A1S2Y5V5	A0A1S2YCW4	F-box protein At2g26850-like.	NAC domain-containing protein 2.	0.533
LOC101497300	NAC47	A0A1S2Y5V5	A0A1S2YG84	F-box protein At2g26850-like.	NAC domain-containing protein 2.	0.523
LOC101497356	LOC101497300	A0A1S3DYX3	A0A1S2Y5V5	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	F-box protein At2g26850-like.	0.508
LOC101497356	LOC101498138	A0A1S3DYX3	A0A1S2YYA3	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	LOB domain-containing protein 37 isoform X1.	0.504
LOC101497356	LOC101511947	A0A1S3DYX3	A0A1S2XS74	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	Uncharacterized protein LOC101511947.	0.508
LOC101497356	NAC02	A0A1S3DYX3	A0A1S2XCB0	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	NAC transcription factor NAM-B2.	0.516
LOC101497356	NAC22	A0A1S3DYX3	A0A1S2XN03	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	NAC domain-containing protein 100 isoform X1.	0.510
LOC101497356	NAC24	A0A1S3DYX3	A0A1S2XSZ5	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	NAC transcription factor 47.	0.529
LOC101497356	NAC27	A0A1S3DYX3	A0A1S2XSR2	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	NAC transcription factor 32.	0.521
LOC101497356	NAC3	A0A1S3DYX3	D0PWB2	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	NAC family transcription factor 3.	0.494
LOC101497356	NAC43	A0A1S3DYX3	A0A1S2YCW4	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	NAC domain-containing protein 2.	0.511
LOC101497356	NAC47	A0A1S3DYX3	A0A1S2YG84	Probable xyloglucan endotransglucosylase/hydrolase protein 16.	NAC domain-containing protein 2.	0.519