LOC101509178 protein (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101509178

Scarecrow-like protein 28; Belongs to the GRAS family. (683 aa)

Predicted Functional Partners:

LOC101513565

0.624

LOC101503103

0.572

LOC101492450

0.509

LOC101496611

0.507

LOC101503085

0.476

LOC101502947

0.470

LOC101505580

0.469

LOC101490178

0.463

LOC101509644

0.463

LOC101506217

0.461

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101490178	LOC101492450	A0A1S2YB88	A0A1S2YJZ1	Transcription factor ICE1-like.	BTB/POZ domain-containing protein At5g60050.	0.427
LOC101490178	LOC101509178	A0A1S2YB88	A0A1S2Z692	Transcription factor ICE1-like.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.463
LOC101492450	LOC101490178	A0A1S2YJZ1	A0A1S2YB88	BTB/POZ domain-containing protein At5g60050.	Transcription factor ICE1-like.	0.427
LOC101492450	LOC101503085	A0A1S2YJZ1	A0A1S3E922	BTB/POZ domain-containing protein At5g60050.	Auxin-responsive protein SAUR32.	0.497
LOC101492450	LOC101505580	A0A1S2YJZ1	A0A1S2YKT9	BTB/POZ domain-containing protein At5g60050.	Uncharacterized protein LOC101505580.	0.469
LOC101492450	LOC101509178	A0A1S2YJZ1	A0A1S2Z692	BTB/POZ domain-containing protein At5g60050.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.509
LOC101496611	LOC101509178	A0A1S2Z0B2	A0A1S2Z692	Probable serine/threonine protein kinase IREH1 isoform X1.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.507
LOC101496611	LOC101513565	A0A1S2Z0B2	A0A1S2Z0S9	Probable serine/threonine protein kinase IREH1 isoform X1.	Multiprotein-bridging factor 1c.	0.506
LOC101502947	LOC101509178	A0A1S2XTQ7	A0A1S2Z692	AP2-like ethylene-responsive transcription factor At2g41710 isoform X1.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.470
LOC101503085	LOC101492450	A0A1S3E922	A0A1S2YJZ1	Auxin-responsive protein SAUR32.	BTB/POZ domain-containing protein At5g60050.	0.497
LOC101503085	LOC101509178	A0A1S3E922	A0A1S2Z692	Auxin-responsive protein SAUR32.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.476
LOC101503103	LOC101509178	A0A1S2YLT9	A0A1S2Z692	Probable serine/threonine protein kinase IRE isoform X1.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.572
LOC101503103	LOC101513565	A0A1S2YLT9	A0A1S2Z0S9	Probable serine/threonine protein kinase IRE isoform X1.	Multiprotein-bridging factor 1c.	0.571
LOC101505580	LOC101492450	A0A1S2YKT9	A0A1S2YJZ1	Uncharacterized protein LOC101505580.	BTB/POZ domain-containing protein At5g60050.	0.469
LOC101505580	LOC101509178	A0A1S2YKT9	A0A1S2Z692	Uncharacterized protein LOC101505580.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.469
LOC101505580	LOC101509644	A0A1S2YKT9	A0A1S2YKA1	Uncharacterized protein LOC101505580.	Uncharacterized protein LOC101509644.	0.496
LOC101506217	LOC101509178	A0A1S2YJJ6	A0A1S2Z692	Multiprotein-bridging factor 1b.	Scarecrow-like protein 28; Belongs to the GRAS family.	0.461
LOC101509178	LOC101490178	A0A1S2Z692	A0A1S2YB88	Scarecrow-like protein 28; Belongs to the GRAS family.	Transcription factor ICE1-like.	0.463
LOC101509178	LOC101492450	A0A1S2Z692	A0A1S2YJZ1	Scarecrow-like protein 28; Belongs to the GRAS family.	BTB/POZ domain-containing protein At5g60050.	0.509
LOC101509178	LOC101496611	A0A1S2Z692	A0A1S2Z0B2	Scarecrow-like protein 28; Belongs to the GRAS family.	Probable serine/threonine protein kinase IREH1 isoform X1.	0.507