R0EU43_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0EU43_9BRAS

Uncharacterized protein. (248 aa)

Predicted Functional Partners:

R0I5U0_9BRAS

0.505

R0IL71_9BRAS

0.499

R0HAM0_9BRAS

0.474

R0G0U1_9BRAS

0.455

R0I5T2_9BRAS

0.445

R0F2T0_9BRAS

0.442

R0G7F2_9BRAS

0.440

R0HY16_9BRAS

0.439

R0HRU1_9BRAS

0.435

R0G128_9BRAS

0.432

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0EU43_9BRAS	R0F2T0_9BRAS	R0EU43	R0F2T0	Uncharacterized protein.	Uncharacterized protein.	0.442
R0EU43_9BRAS	R0G0U1_9BRAS	R0EU43	R0G0U1	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.455
R0EU43_9BRAS	R0G128_9BRAS	R0EU43	R0G128	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.432
R0EU43_9BRAS	R0G7F2_9BRAS	R0EU43	R0G7F2	Uncharacterized protein.	Uncharacterized protein.	0.440
R0EU43_9BRAS	R0HAM0_9BRAS	R0EU43	R0HAM0	Uncharacterized protein.	Uncharacterized protein.	0.474
R0EU43_9BRAS	R0HRU1_9BRAS	R0EU43	R0HRU1	Uncharacterized protein.	Uncharacterized protein.	0.435
R0EU43_9BRAS	R0HY16_9BRAS	R0EU43	R0HY16	Uncharacterized protein.	Uncharacterized protein.	0.439
R0EU43_9BRAS	R0I5T2_9BRAS	R0EU43	R0I5T2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.445
R0EU43_9BRAS	R0I5U0_9BRAS	R0EU43	R0I5U0	Uncharacterized protein.	Uncharacterized protein.	0.505
R0EU43_9BRAS	R0IL71_9BRAS	R0EU43	R0IL71	Uncharacterized protein.	Uncharacterized protein.	0.499
R0F2T0_9BRAS	R0EU43_9BRAS	R0F2T0	R0EU43	Uncharacterized protein.	Uncharacterized protein.	0.442
R0F2T0_9BRAS	R0G0U1_9BRAS	R0F2T0	R0G0U1	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.496
R0F2T0_9BRAS	R0G128_9BRAS	R0F2T0	R0G128	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.500
R0F2T0_9BRAS	R0I5U0_9BRAS	R0F2T0	R0I5U0	Uncharacterized protein.	Uncharacterized protein.	0.505
R0F2T0_9BRAS	R0IL71_9BRAS	R0F2T0	R0IL71	Uncharacterized protein.	Uncharacterized protein.	0.527
R0G0U1_9BRAS	R0EU43_9BRAS	R0G0U1	R0EU43	Phytocyanin domain-containing protein.	Uncharacterized protein.	0.455
R0G0U1_9BRAS	R0F2T0_9BRAS	R0G0U1	R0F2T0	Phytocyanin domain-containing protein.	Uncharacterized protein.	0.496
R0G0U1_9BRAS	R0I5U0_9BRAS	R0G0U1	R0I5U0	Phytocyanin domain-containing protein.	Uncharacterized protein.	0.509
R0G0U1_9BRAS	R0IL71_9BRAS	R0G0U1	R0IL71	Phytocyanin domain-containing protein.	Uncharacterized protein.	0.516
R0G128_9BRAS	R0EU43_9BRAS	R0G128	R0EU43	Phytocyanin domain-containing protein.	Uncharacterized protein.	0.432