R0HEW6_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0HEW6_9BRAS

C2H2-type domain-containing protein. (226 aa)

Predicted Functional Partners:

R0EXI8_9BRAS

0.802

R0HQX6_9BRAS

0.752

R0I8D0_9BRAS

0.728

R0GIV6_9BRAS

0.671

R0HIM3_9BRAS

0.653

R0IAF8_9BRAS

0.636

R0HZ82_9BRAS

0.606

R0H8V5_9BRAS

0.600

R0HAN8_9BRAS

0.584

R0I5N3_9BRAS

0.581

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0EXI8_9BRAS	R0HAN8_9BRAS	R0EXI8	R0HAN8	TCP domain-containing protein.	C2H2-type domain-containing protein.	0.502
R0EXI8_9BRAS	R0HEW6_9BRAS	R0EXI8	R0HEW6	TCP domain-containing protein.	C2H2-type domain-containing protein.	0.802
R0EXI8_9BRAS	R0HIM3_9BRAS	R0EXI8	R0HIM3	TCP domain-containing protein.	NAC domain-containing protein.	0.428
R0EXI8_9BRAS	R0HQX6_9BRAS	R0EXI8	R0HQX6	TCP domain-containing protein.	TCP domain-containing protein.	0.455
R0EXI8_9BRAS	R0I8D0_9BRAS	R0EXI8	R0I8D0	TCP domain-containing protein.	C2H2-type domain-containing protein.	0.731
R0GIV6_9BRAS	R0HEW6_9BRAS	R0GIV6	R0HEW6	Uncharacterized protein.	C2H2-type domain-containing protein.	0.671
R0GIV6_9BRAS	R0HIM3_9BRAS	R0GIV6	R0HIM3	Uncharacterized protein.	NAC domain-containing protein.	0.410
R0GIV6_9BRAS	R0I8D0_9BRAS	R0GIV6	R0I8D0	Uncharacterized protein.	C2H2-type domain-containing protein.	0.414
R0H8V5_9BRAS	R0HEW6_9BRAS	R0H8V5	R0HEW6	TCP domain-containing protein.	C2H2-type domain-containing protein.	0.600
R0H8V5_9BRAS	R0HIM3_9BRAS	R0H8V5	R0HIM3	TCP domain-containing protein.	NAC domain-containing protein.	0.449
R0HAN8_9BRAS	R0EXI8_9BRAS	R0HAN8	R0EXI8	C2H2-type domain-containing protein.	TCP domain-containing protein.	0.502
R0HAN8_9BRAS	R0HEW6_9BRAS	R0HAN8	R0HEW6	C2H2-type domain-containing protein.	C2H2-type domain-containing protein.	0.584
R0HAN8_9BRAS	R0HZ82_9BRAS	R0HAN8	R0HZ82	C2H2-type domain-containing protein.	TCP domain-containing protein.	0.402
R0HAN8_9BRAS	R0I8D0_9BRAS	R0HAN8	R0I8D0	C2H2-type domain-containing protein.	C2H2-type domain-containing protein.	0.702
R0HEW6_9BRAS	R0EXI8_9BRAS	R0HEW6	R0EXI8	C2H2-type domain-containing protein.	TCP domain-containing protein.	0.802
R0HEW6_9BRAS	R0GIV6_9BRAS	R0HEW6	R0GIV6	C2H2-type domain-containing protein.	Uncharacterized protein.	0.671
R0HEW6_9BRAS	R0H8V5_9BRAS	R0HEW6	R0H8V5	C2H2-type domain-containing protein.	TCP domain-containing protein.	0.600
R0HEW6_9BRAS	R0HAN8_9BRAS	R0HEW6	R0HAN8	C2H2-type domain-containing protein.	C2H2-type domain-containing protein.	0.584
R0HEW6_9BRAS	R0HIM3_9BRAS	R0HEW6	R0HIM3	C2H2-type domain-containing protein.	NAC domain-containing protein.	0.653
R0HEW6_9BRAS	R0HQX6_9BRAS	R0HEW6	R0HQX6	C2H2-type domain-containing protein.	TCP domain-containing protein.	0.752