R0HUL7_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0HUL7_9BRAS

BHLH domain-containing protein. (242 aa)

Predicted Functional Partners:

R0H5V2_9BRAS

0.914

R0F5N0_9BRAS

0.910

R0F9G7_9BRAS

0.910

R0GR79_9BRAS

0.910

R0IMC1_9BRAS

0.910

R0HDB5_9BRAS

0.894

R0GNJ4_9BRAS

0.889

R0HMW7_9BRAS

0.881

R0HXQ8_9BRAS

0.866

R0GV58_9BRAS

0.860

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0F5N0_9BRAS	R0F9G7_9BRAS	R0F5N0	R0F9G7	BHLH domain-containing protein.	Uncharacterized protein.	0.838
R0F5N0_9BRAS	R0GNJ4_9BRAS	R0F5N0	R0GNJ4	BHLH domain-containing protein.	BHLH domain-containing protein.	0.452
R0F5N0_9BRAS	R0GR79_9BRAS	R0F5N0	R0GR79	BHLH domain-containing protein.	BHLH domain-containing protein.	0.495
R0F5N0_9BRAS	R0GV58_9BRAS	R0F5N0	R0GV58	BHLH domain-containing protein.	FAD-binding FR-type domain-containing protein.	0.773
R0F5N0_9BRAS	R0HDB5_9BRAS	R0F5N0	R0HDB5	BHLH domain-containing protein.	BHLH domain-containing protein.	0.760
R0F5N0_9BRAS	R0HUL7_9BRAS	R0F5N0	R0HUL7	BHLH domain-containing protein.	BHLH domain-containing protein.	0.910
R0F5N0_9BRAS	R0HXQ8_9BRAS	R0F5N0	R0HXQ8	BHLH domain-containing protein.	Uncharacterized protein.	0.869
R0F5N0_9BRAS	R0IMC1_9BRAS	R0F5N0	R0IMC1	BHLH domain-containing protein.	FAD-binding FR-type domain-containing protein.	0.839
R0F9G7_9BRAS	R0F5N0_9BRAS	R0F9G7	R0F5N0	Uncharacterized protein.	BHLH domain-containing protein.	0.838
R0F9G7_9BRAS	R0GNJ4_9BRAS	R0F9G7	R0GNJ4	Uncharacterized protein.	BHLH domain-containing protein.	0.775
R0F9G7_9BRAS	R0GR79_9BRAS	R0F9G7	R0GR79	Uncharacterized protein.	BHLH domain-containing protein.	0.854
R0F9G7_9BRAS	R0GV58_9BRAS	R0F9G7	R0GV58	Uncharacterized protein.	FAD-binding FR-type domain-containing protein.	0.884
R0F9G7_9BRAS	R0H5V2_9BRAS	R0F9G7	R0H5V2	Uncharacterized protein.	BHLH domain-containing protein.	0.898
R0F9G7_9BRAS	R0HDB5_9BRAS	R0F9G7	R0HDB5	Uncharacterized protein.	BHLH domain-containing protein.	0.910
R0F9G7_9BRAS	R0HMW7_9BRAS	R0F9G7	R0HMW7	Uncharacterized protein.	BHLH domain-containing protein.	0.775
R0F9G7_9BRAS	R0HUL7_9BRAS	R0F9G7	R0HUL7	Uncharacterized protein.	BHLH domain-containing protein.	0.910
R0F9G7_9BRAS	R0HXQ8_9BRAS	R0F9G7	R0HXQ8	Uncharacterized protein.	Uncharacterized protein.	0.883
R0F9G7_9BRAS	R0IMC1_9BRAS	R0F9G7	R0IMC1	Uncharacterized protein.	FAD-binding FR-type domain-containing protein.	0.952
R0GNJ4_9BRAS	R0F5N0_9BRAS	R0GNJ4	R0F5N0	BHLH domain-containing protein.	BHLH domain-containing protein.	0.452
R0GNJ4_9BRAS	R0F9G7_9BRAS	R0GNJ4	R0F9G7	BHLH domain-containing protein.	Uncharacterized protein.	0.775