R0GEJ6_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0GEJ6_9BRAS

RWP-RK domain-containing protein. (298 aa)

Predicted Functional Partners:

R0F7T3_9BRAS

0.807

R0GNT2_9BRAS

0.772

R0G0X3_9BRAS

0.760

R0GGQ7_9BRAS

0.760

R0GUG0_9BRAS

0.734

R0G0U6_9BRAS

0.711

R0F8H6_9BRAS

0.702

R0G2Z6_9BRAS

0.702

R0FN83_9BRAS

0.647

R0HUN9_9BRAS

0.595

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0F7T3_9BRAS	R0GEJ6_9BRAS	R0F7T3	R0GEJ6	Uncharacterized protein.	RWP-RK domain-containing protein.	0.807
R0F8H6_9BRAS	R0G0U6_9BRAS	R0F8H6	R0G0U6	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.702
R0F8H6_9BRAS	R0G0X3_9BRAS	R0F8H6	R0G0X3	Uncharacterized protein.	Uncharacterized protein.	0.479
R0F8H6_9BRAS	R0GEJ6_9BRAS	R0F8H6	R0GEJ6	Uncharacterized protein.	RWP-RK domain-containing protein.	0.702
R0F8H6_9BRAS	R0GNT2_9BRAS	R0F8H6	R0GNT2	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.571
R0F8H6_9BRAS	R0GUG0_9BRAS	R0F8H6	R0GUG0	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.476
R0F8H6_9BRAS	R0HUN9_9BRAS	R0F8H6	R0HUN9	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.595
R0FN83_9BRAS	R0GEJ6_9BRAS	R0FN83	R0GEJ6	Uncharacterized protein.	RWP-RK domain-containing protein.	0.647
R0G0U6_9BRAS	R0F8H6_9BRAS	R0G0U6	R0F8H6	Prolamin_like domain-containing protein.	Uncharacterized protein.	0.702
R0G0U6_9BRAS	R0G0X3_9BRAS	R0G0U6	R0G0X3	Prolamin_like domain-containing protein.	Uncharacterized protein.	0.711
R0G0U6_9BRAS	R0GEJ6_9BRAS	R0G0U6	R0GEJ6	Prolamin_like domain-containing protein.	RWP-RK domain-containing protein.	0.711
R0G0U6_9BRAS	R0GNT2_9BRAS	R0G0U6	R0GNT2	Prolamin_like domain-containing protein.	Prolamin_like domain-containing protein.	0.760
R0G0X3_9BRAS	R0F8H6_9BRAS	R0G0X3	R0F8H6	Uncharacterized protein.	Uncharacterized protein.	0.479
R0G0X3_9BRAS	R0G0U6_9BRAS	R0G0X3	R0G0U6	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.711
R0G0X3_9BRAS	R0GEJ6_9BRAS	R0G0X3	R0GEJ6	Uncharacterized protein.	RWP-RK domain-containing protein.	0.760
R0G0X3_9BRAS	R0GNT2_9BRAS	R0G0X3	R0GNT2	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.865
R0G0X3_9BRAS	R0HUN9_9BRAS	R0G0X3	R0HUN9	Uncharacterized protein.	Prolamin_like domain-containing protein.	0.679
R0G2Z6_9BRAS	R0GEJ6_9BRAS	R0G2Z6	R0GEJ6	Uncharacterized protein.	RWP-RK domain-containing protein.	0.702
R0GEJ6_9BRAS	R0F7T3_9BRAS	R0GEJ6	R0F7T3	RWP-RK domain-containing protein.	Uncharacterized protein.	0.807
R0GEJ6_9BRAS	R0F8H6_9BRAS	R0GEJ6	R0F8H6	RWP-RK domain-containing protein.	Uncharacterized protein.	0.702