R0IF05_9BRAS protein (Capsella rubella) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R0IF05_9BRAS

BHLH domain-containing protein. (364 aa)

Predicted Functional Partners:

R0GQ20_9BRAS

0.773

R0GRI4_9BRAS

0.701

R0HL01_9BRAS

0.701

R0G958_9BRAS

0.683

R0F4Q3_9BRAS

0.627

R0FXN3_9BRAS

0.624

R0F853_9BRAS

0.617

R0HLE7_9BRAS

0.608

R0HRS9_9BRAS

0.563

R0HXN2_9BRAS

0.541

Your Current Organism:

Capsella rubella

NCBI taxonomy Id: 81985
Other names: C. rubella, Capsella rubella Reut.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R0F4Q3_9BRAS	R0F853_9BRAS	R0F4Q3	R0F853	BHLH domain-containing protein.	WAT1-related protein.	0.700
R0F4Q3_9BRAS	R0G958_9BRAS	R0F4Q3	R0G958	BHLH domain-containing protein.	WAT1-related protein.	0.702
R0F4Q3_9BRAS	R0GQ20_9BRAS	R0F4Q3	R0GQ20	BHLH domain-containing protein.	BHLH domain-containing protein.	0.650
R0F4Q3_9BRAS	R0HL01_9BRAS	R0F4Q3	R0HL01	BHLH domain-containing protein.	WAT1-related protein.	0.702
R0F4Q3_9BRAS	R0IF05_9BRAS	R0F4Q3	R0IF05	BHLH domain-containing protein.	BHLH domain-containing protein.	0.627
R0F853_9BRAS	R0F4Q3_9BRAS	R0F853	R0F4Q3	WAT1-related protein.	BHLH domain-containing protein.	0.700
R0F853_9BRAS	R0IF05_9BRAS	R0F853	R0IF05	WAT1-related protein.	BHLH domain-containing protein.	0.617
R0FXN3_9BRAS	R0GQ20_9BRAS	R0FXN3	R0GQ20	BHLH domain-containing protein.	BHLH domain-containing protein.	0.581
R0FXN3_9BRAS	R0HLE7_9BRAS	R0FXN3	R0HLE7	BHLH domain-containing protein.	BHLH domain-containing protein.	0.673
R0FXN3_9BRAS	R0IF05_9BRAS	R0FXN3	R0IF05	BHLH domain-containing protein.	BHLH domain-containing protein.	0.624
R0G958_9BRAS	R0F4Q3_9BRAS	R0G958	R0F4Q3	WAT1-related protein.	BHLH domain-containing protein.	0.702
R0G958_9BRAS	R0IF05_9BRAS	R0G958	R0IF05	WAT1-related protein.	BHLH domain-containing protein.	0.683
R0GQ20_9BRAS	R0F4Q3_9BRAS	R0GQ20	R0F4Q3	BHLH domain-containing protein.	BHLH domain-containing protein.	0.650
R0GQ20_9BRAS	R0FXN3_9BRAS	R0GQ20	R0FXN3	BHLH domain-containing protein.	BHLH domain-containing protein.	0.581
R0GQ20_9BRAS	R0GRI4_9BRAS	R0GQ20	R0GRI4	BHLH domain-containing protein.	BHLH domain-containing protein.	0.682
R0GQ20_9BRAS	R0HLE7_9BRAS	R0GQ20	R0HLE7	BHLH domain-containing protein.	BHLH domain-containing protein.	0.760
R0GQ20_9BRAS	R0IF05_9BRAS	R0GQ20	R0IF05	BHLH domain-containing protein.	BHLH domain-containing protein.	0.773
R0GRI4_9BRAS	R0GQ20_9BRAS	R0GRI4	R0GQ20	BHLH domain-containing protein.	BHLH domain-containing protein.	0.682
R0GRI4_9BRAS	R0HLE7_9BRAS	R0GRI4	R0HLE7	BHLH domain-containing protein.	BHLH domain-containing protein.	0.704
R0GRI4_9BRAS	R0IF05_9BRAS	R0GRI4	R0IF05	BHLH domain-containing protein.	BHLH domain-containing protein.	0.701