V4JTT4_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4JTT4_EUTSA

MADS-box domain-containing protein. (321 aa)

Predicted Functional Partners:

V4LG23_EUTSA

0.446

V4LQW5_EUTSA

0.444

V4MSL5_EUTSA

0.440

V4KCT5_EUTSA

0.436

V4M432_EUTSA

0.436

V4KJ89_EUTSA

0.427

V4MAV4_EUTSA

0.420

V4MJI1_EUTSA

0.415

V4KN80_EUTSA

0.410

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JTT4_EUTSA	V4KCT5_EUTSA	V4JTT4	V4KCT5	MADS-box domain-containing protein.	Uncharacterized protein.	0.436
V4JTT4_EUTSA	V4KJ89_EUTSA	V4JTT4	V4KJ89	MADS-box domain-containing protein.	Homeobox domain-containing protein.	0.427
V4JTT4_EUTSA	V4KN80_EUTSA	V4JTT4	V4KN80	MADS-box domain-containing protein.	Uncharacterized protein.	0.410
V4JTT4_EUTSA	V4LG23_EUTSA	V4JTT4	V4LG23	MADS-box domain-containing protein.	Fibronectin type-III domain-containing protein.	0.446
V4JTT4_EUTSA	V4LQW5_EUTSA	V4JTT4	V4LQW5	MADS-box domain-containing protein.	LEA_2 domain-containing protein.	0.444
V4JTT4_EUTSA	V4M432_EUTSA	V4JTT4	V4M432	MADS-box domain-containing protein.	Uncharacterized protein.	0.436
V4JTT4_EUTSA	V4MAV4_EUTSA	V4JTT4	V4MAV4	MADS-box domain-containing protein.	PfkB domain-containing protein.	0.420
V4JTT4_EUTSA	V4MJI1_EUTSA	V4JTT4	V4MJI1	MADS-box domain-containing protein.	Uncharacterized protein.	0.415
V4JTT4_EUTSA	V4MSL5_EUTSA	V4JTT4	V4MSL5	MADS-box domain-containing protein.	Uncharacterized protein.	0.440
V4KCT5_EUTSA	V4JTT4_EUTSA	V4KCT5	V4JTT4	Uncharacterized protein.	MADS-box domain-containing protein.	0.436
V4KCT5_EUTSA	V4KN80_EUTSA	V4KCT5	V4KN80	Uncharacterized protein.	Uncharacterized protein.	0.486
V4KCT5_EUTSA	V4LQW5_EUTSA	V4KCT5	V4LQW5	Uncharacterized protein.	LEA_2 domain-containing protein.	0.428
V4KCT5_EUTSA	V4M432_EUTSA	V4KCT5	V4M432	Uncharacterized protein.	Uncharacterized protein.	0.495
V4KCT5_EUTSA	V4MJI1_EUTSA	V4KCT5	V4MJI1	Uncharacterized protein.	Uncharacterized protein.	0.500
V4KJ89_EUTSA	V4JTT4_EUTSA	V4KJ89	V4JTT4	Homeobox domain-containing protein.	MADS-box domain-containing protein.	0.427
V4KN80_EUTSA	V4JTT4_EUTSA	V4KN80	V4JTT4	Uncharacterized protein.	MADS-box domain-containing protein.	0.410
V4KN80_EUTSA	V4KCT5_EUTSA	V4KN80	V4KCT5	Uncharacterized protein.	Uncharacterized protein.	0.486
V4KN80_EUTSA	V4LQW5_EUTSA	V4KN80	V4LQW5	Uncharacterized protein.	LEA_2 domain-containing protein.	0.454
V4KN80_EUTSA	V4MSL5_EUTSA	V4KN80	V4MSL5	Uncharacterized protein.	Uncharacterized protein.	0.484
V4LG23_EUTSA	V4JTT4_EUTSA	V4LG23	V4JTT4	Fibronectin type-III domain-containing protein.	MADS-box domain-containing protein.	0.446

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About