STRINGSTRING
V4KFC0_EUTSA V4KFC0_EUTSA V4KBN4_EUTSA V4KBN4_EUTSA V4LB18_EUTSA V4LB18_EUTSA V4MDQ5_EUTSA V4MDQ5_EUTSA V4N6Z1_EUTSA V4N6Z1_EUTSA V4MFQ0_EUTSA V4MFQ0_EUTSA V4P4H6_EUTSA V4P4H6_EUTSA V4LQP5_EUTSA V4LQP5_EUTSA V4KFK2_EUTSA V4KFK2_EUTSA V4L544_EUTSA V4L544_EUTSA V4KJ90_EUTSA V4KJ90_EUTSA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4KFC0_EUTSANAC domain-containing protein. (321 aa)    
Predicted Functional Partners:
V4KBN4_EUTSA
F-box domain-containing protein.
      
 0.547
V4LB18_EUTSA
Uncharacterized protein.
  
     0.483
V4MDQ5_EUTSA
Uncharacterized protein.
  
     0.483
V4N6Z1_EUTSA
Ubiquitin-like domain-containing protein.
  
     0.475
V4MFQ0_EUTSA
Lectin_legB domain-containing protein.
  
     0.472
V4P4H6_EUTSA
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.462
V4LQP5_EUTSA
Uncharacterized protein.
  
     0.460
V4KFK2_EUTSA
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.452
V4L544_EUTSA
Uncharacterized protein.
  
     0.452
V4KJ90_EUTSA
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.444
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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