V4MIL3_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4MIL3_EUTSA

AP2/ERF domain-containing protein. (145 aa)

Predicted Functional Partners:

V4KZD2_EUTSA

0.566

V4L7C3_EUTSA

0.551

V4LX98_EUTSA

0.533

V4NZW4_EUTSA

0.533

V4L104_EUTSA

0.528

V4LCY0_EUTSA

0.520

V4KCY6_EUTSA

0.515

V4LYJ8_EUTSA

0.515

V4JQU9_EUTSA

0.514

V4KRX0_EUTSA

0.513

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JQU9_EUTSA	V4MIL3_EUTSA	V4JQU9	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.514
V4KCY6_EUTSA	V4MIL3_EUTSA	V4KCY6	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.515
V4KRX0_EUTSA	V4MIL3_EUTSA	V4KRX0	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.513
V4KZD2_EUTSA	V4MIL3_EUTSA	V4KZD2	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.566
V4L104_EUTSA	V4MIL3_EUTSA	V4L104	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.528
V4L7C3_EUTSA	V4MIL3_EUTSA	V4L7C3	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.551
V4LCY0_EUTSA	V4MIL3_EUTSA	V4LCY0	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.520
V4LX98_EUTSA	V4MIL3_EUTSA	V4LX98	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.533
V4LYJ8_EUTSA	V4MIL3_EUTSA	V4LYJ8	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.515
V4MIL3_EUTSA	V4JQU9_EUTSA	V4MIL3	V4JQU9	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.514
V4MIL3_EUTSA	V4KCY6_EUTSA	V4MIL3	V4KCY6	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.515
V4MIL3_EUTSA	V4KRX0_EUTSA	V4MIL3	V4KRX0	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.513
V4MIL3_EUTSA	V4KZD2_EUTSA	V4MIL3	V4KZD2	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.566
V4MIL3_EUTSA	V4L104_EUTSA	V4MIL3	V4L104	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.528
V4MIL3_EUTSA	V4L7C3_EUTSA	V4MIL3	V4L7C3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.551
V4MIL3_EUTSA	V4LCY0_EUTSA	V4MIL3	V4LCY0	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.520
V4MIL3_EUTSA	V4LX98_EUTSA	V4MIL3	V4LX98	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.533
V4MIL3_EUTSA	V4LYJ8_EUTSA	V4MIL3	V4LYJ8	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.515
V4MIL3_EUTSA	V4NZW4_EUTSA	V4MIL3	V4NZW4	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.533
V4NZW4_EUTSA	V4MIL3_EUTSA	V4NZW4	V4MIL3	AP2/ERF domain-containing protein.	AP2/ERF domain-containing protein.	0.533

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About