V4KMY7_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4KMY7_EUTSA

AP2/ERF domain-containing protein. (305 aa)

Predicted Functional Partners:

V4LDB6_EUTSA

0.510

V4LRZ0_EUTSA

0.504

V4LX81_EUTSA

0.496

V4L827_EUTSA

0.495

V4LRV4_EUTSA

0.494

V4LVL4_EUTSA

0.493

V4NJN5_EUTSA

0.493

V4KB08_EUTSA

0.492

V4LXC6_EUTSA

0.491

V4MFK8_EUTSA

0.491

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4KB08_EUTSA	V4KMY7_EUTSA	V4KB08	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.492
V4KMY7_EUTSA	V4KB08_EUTSA	V4KMY7	V4KB08	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.492
V4KMY7_EUTSA	V4L827_EUTSA	V4KMY7	V4L827	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.495
V4KMY7_EUTSA	V4LDB6_EUTSA	V4KMY7	V4LDB6	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.510
V4KMY7_EUTSA	V4LRV4_EUTSA	V4KMY7	V4LRV4	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.494
V4KMY7_EUTSA	V4LRZ0_EUTSA	V4KMY7	V4LRZ0	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.504
V4KMY7_EUTSA	V4LVL4_EUTSA	V4KMY7	V4LVL4	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.493
V4KMY7_EUTSA	V4LX81_EUTSA	V4KMY7	V4LX81	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.496
V4KMY7_EUTSA	V4LXC6_EUTSA	V4KMY7	V4LXC6	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.491
V4KMY7_EUTSA	V4MFK8_EUTSA	V4KMY7	V4MFK8	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.491
V4KMY7_EUTSA	V4NJN5_EUTSA	V4KMY7	V4NJN5	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.493
V4L827_EUTSA	V4KMY7_EUTSA	V4L827	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.495
V4LDB6_EUTSA	V4KMY7_EUTSA	V4LDB6	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.510
V4LRV4_EUTSA	V4KMY7_EUTSA	V4LRV4	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.494
V4LRZ0_EUTSA	V4KMY7_EUTSA	V4LRZ0	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.504
V4LVL4_EUTSA	V4KMY7_EUTSA	V4LVL4	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.493
V4LX81_EUTSA	V4KMY7_EUTSA	V4LX81	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.496
V4LXC6_EUTSA	V4KMY7_EUTSA	V4LXC6	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.491
V4MFK8_EUTSA	V4KMY7_EUTSA	V4MFK8	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.491
V4NJN5_EUTSA	V4KMY7_EUTSA	V4NJN5	V4KMY7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.493

Server load: low (26%) [HD]

Permalink

Network

Cooccurrence

Textmining

Neighborhood

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About