V4L9C2_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4L9C2_EUTSA

Uncharacterized protein. (277 aa)

Predicted Functional Partners:

V4M669_EUTSA

0.598

V4NSM7_EUTSA

0.553

V4LMN7_EUTSA

0.549

V4NCX0_EUTSA

0.546

V4LS84_EUTSA

0.542

V4JRA7_EUTSA

0.535

V4MBS5_EUTSA

0.522

V4KH22_EUTSA

0.514

V4KU15_EUTSA

0.508

V4LHU2_EUTSA

0.496

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JRA7_EUTSA	V4L9C2_EUTSA	V4JRA7	V4L9C2	Uncharacterized protein.	Uncharacterized protein.	0.535
V4KH22_EUTSA	V4KU15_EUTSA	V4KH22	V4KU15	Myb-like domain-containing protein.	DUF4005 domain-containing protein.	0.523
V4KH22_EUTSA	V4L9C2_EUTSA	V4KH22	V4L9C2	Myb-like domain-containing protein.	Uncharacterized protein.	0.514
V4KH22_EUTSA	V4LHU2_EUTSA	V4KH22	V4LHU2	Myb-like domain-containing protein.	Uncharacterized protein.	0.509
V4KU15_EUTSA	V4KH22_EUTSA	V4KU15	V4KH22	DUF4005 domain-containing protein.	Myb-like domain-containing protein.	0.523
V4KU15_EUTSA	V4L9C2_EUTSA	V4KU15	V4L9C2	DUF4005 domain-containing protein.	Uncharacterized protein.	0.508
V4KU15_EUTSA	V4LHU2_EUTSA	V4KU15	V4LHU2	DUF4005 domain-containing protein.	Uncharacterized protein.	0.478
V4L9C2_EUTSA	V4JRA7_EUTSA	V4L9C2	V4JRA7	Uncharacterized protein.	Uncharacterized protein.	0.535
V4L9C2_EUTSA	V4KH22_EUTSA	V4L9C2	V4KH22	Uncharacterized protein.	Myb-like domain-containing protein.	0.514
V4L9C2_EUTSA	V4KU15_EUTSA	V4L9C2	V4KU15	Uncharacterized protein.	DUF4005 domain-containing protein.	0.508
V4L9C2_EUTSA	V4LHU2_EUTSA	V4L9C2	V4LHU2	Uncharacterized protein.	Uncharacterized protein.	0.496
V4L9C2_EUTSA	V4LMN7_EUTSA	V4L9C2	V4LMN7	Uncharacterized protein.	Uncharacterized protein.	0.549
V4L9C2_EUTSA	V4LS84_EUTSA	V4L9C2	V4LS84	Uncharacterized protein.	Uncharacterized protein.	0.542
V4L9C2_EUTSA	V4M669_EUTSA	V4L9C2	V4M669	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.598
V4L9C2_EUTSA	V4MBS5_EUTSA	V4L9C2	V4MBS5	Uncharacterized protein.	Uncharacterized protein.	0.522
V4L9C2_EUTSA	V4NCX0_EUTSA	V4L9C2	V4NCX0	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.546
V4L9C2_EUTSA	V4NSM7_EUTSA	V4L9C2	V4NSM7	Uncharacterized protein.	MADS-box domain-containing protein.	0.553
V4LHU2_EUTSA	V4KH22_EUTSA	V4LHU2	V4KH22	Uncharacterized protein.	Myb-like domain-containing protein.	0.509
V4LHU2_EUTSA	V4KU15_EUTSA	V4LHU2	V4KU15	Uncharacterized protein.	DUF4005 domain-containing protein.	0.478
V4LHU2_EUTSA	V4L9C2_EUTSA	V4LHU2	V4L9C2	Uncharacterized protein.	Uncharacterized protein.	0.496

page 1 of 2

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About