V4LL10_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4LL10_EUTSA

WRKY domain-containing protein. (280 aa)

Predicted Functional Partners:

V4MJ41_EUTSA

0.792

V4K806_EUTSA

0.789

V4LIL0_EUTSA

0.589

V4KCR1_EUTSA

0.585

V4KDC5_EUTSA

0.576

V4L2Q0_EUTSA

0.564

V4KK97_EUTSA

0.549

V4KGJ3_EUTSA

0.547

V4KQI0_EUTSA

0.547

V4MS25_EUTSA

0.533

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4K806_EUTSA	V4KQI0_EUTSA	V4K806	V4KQI0	WRKY domain-containing protein.	BHLH domain-containing protein.	0.465
V4K806_EUTSA	V4LL10_EUTSA	V4K806	V4LL10	WRKY domain-containing protein.	WRKY domain-containing protein.	0.789
V4KCR1_EUTSA	V4KDC5_EUTSA	V4KCR1	V4KDC5	Uncharacterized protein.	Uncharacterized protein.	0.563
V4KCR1_EUTSA	V4KK97_EUTSA	V4KCR1	V4KK97	Uncharacterized protein.	Chorismate_bind domain-containing protein.	0.614
V4KCR1_EUTSA	V4KQI0_EUTSA	V4KCR1	V4KQI0	Uncharacterized protein.	BHLH domain-containing protein.	0.578
V4KCR1_EUTSA	V4L2Q0_EUTSA	V4KCR1	V4L2Q0	Uncharacterized protein.	Glutaredoxin domain-containing protein.	0.586
V4KCR1_EUTSA	V4LIL0_EUTSA	V4KCR1	V4LIL0	Uncharacterized protein.	Uncharacterized protein.	0.424
V4KCR1_EUTSA	V4LL10_EUTSA	V4KCR1	V4LL10	Uncharacterized protein.	WRKY domain-containing protein.	0.585
V4KCR1_EUTSA	V4MS25_EUTSA	V4KCR1	V4MS25	Uncharacterized protein.	Uncharacterized protein.	0.990
V4KDC5_EUTSA	V4KCR1_EUTSA	V4KDC5	V4KCR1	Uncharacterized protein.	Uncharacterized protein.	0.563
V4KDC5_EUTSA	V4KK97_EUTSA	V4KDC5	V4KK97	Uncharacterized protein.	Chorismate_bind domain-containing protein.	0.603
V4KDC5_EUTSA	V4LIL0_EUTSA	V4KDC5	V4LIL0	Uncharacterized protein.	Uncharacterized protein.	0.595
V4KDC5_EUTSA	V4LL10_EUTSA	V4KDC5	V4LL10	Uncharacterized protein.	WRKY domain-containing protein.	0.576
V4KDC5_EUTSA	V4MS25_EUTSA	V4KDC5	V4MS25	Uncharacterized protein.	Uncharacterized protein.	0.506
V4KGJ3_EUTSA	V4LL10_EUTSA	V4KGJ3	V4LL10	Uncharacterized protein.	WRKY domain-containing protein.	0.547
V4KK97_EUTSA	V4KCR1_EUTSA	V4KK97	V4KCR1	Chorismate_bind domain-containing protein.	Uncharacterized protein.	0.614
V4KK97_EUTSA	V4KDC5_EUTSA	V4KK97	V4KDC5	Chorismate_bind domain-containing protein.	Uncharacterized protein.	0.603
V4KK97_EUTSA	V4KQI0_EUTSA	V4KK97	V4KQI0	Chorismate_bind domain-containing protein.	BHLH domain-containing protein.	0.548
V4KK97_EUTSA	V4LIL0_EUTSA	V4KK97	V4LIL0	Chorismate_bind domain-containing protein.	Uncharacterized protein.	0.568
V4KK97_EUTSA	V4LL10_EUTSA	V4KK97	V4LL10	Chorismate_bind domain-containing protein.	WRKY domain-containing protein.	0.549

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About