V4S761_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4S761_9ROSI

Uncharacterized protein. (289 aa)

Predicted Functional Partners:

V4UUQ0_9ROSI

0.617

V4S3Y2_9ROSI

0.574

V4TTR8_9ROSI

0.486

V4TK88_9ROSI

0.450

V4UFS7_9ROSI

0.450

V4S5Q3_9ROSI

0.423

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4S3Y2_9ROSI	V4S5Q3_9ROSI	V4S3Y2	V4S5Q3	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.693
V4S3Y2_9ROSI	V4S761_9ROSI	V4S3Y2	V4S761	Uncharacterized protein.	Uncharacterized protein.	0.574
V4S3Y2_9ROSI	V4TK88_9ROSI	V4S3Y2	V4TK88	Uncharacterized protein.	Uncharacterized protein.	0.770
V4S3Y2_9ROSI	V4TTR8_9ROSI	V4S3Y2	V4TTR8	Uncharacterized protein.	PCI domain-containing protein.	0.656
V4S3Y2_9ROSI	V4UFS7_9ROSI	V4S3Y2	V4UFS7	Uncharacterized protein.	Uncharacterized protein.	0.770
V4S3Y2_9ROSI	V4UUQ0_9ROSI	V4S3Y2	V4UUQ0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.975
V4S5Q3_9ROSI	V4S3Y2_9ROSI	V4S5Q3	V4S3Y2	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.693
V4S5Q3_9ROSI	V4S761_9ROSI	V4S5Q3	V4S761	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Uncharacterized protein.	0.423
V4S5Q3_9ROSI	V4TTR8_9ROSI	V4S5Q3	V4TTR8	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	PCI domain-containing protein.	0.996
V4S5Q3_9ROSI	V4UUQ0_9ROSI	V4S5Q3	V4UUQ0	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Ubiquitin-like domain-containing protein.	0.977
V4S761_9ROSI	V4S3Y2_9ROSI	V4S761	V4S3Y2	Uncharacterized protein.	Uncharacterized protein.	0.574
V4S761_9ROSI	V4S5Q3_9ROSI	V4S761	V4S5Q3	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.423
V4S761_9ROSI	V4TK88_9ROSI	V4S761	V4TK88	Uncharacterized protein.	Uncharacterized protein.	0.450
V4S761_9ROSI	V4TTR8_9ROSI	V4S761	V4TTR8	Uncharacterized protein.	PCI domain-containing protein.	0.486
V4S761_9ROSI	V4UFS7_9ROSI	V4S761	V4UFS7	Uncharacterized protein.	Uncharacterized protein.	0.450
V4S761_9ROSI	V4UUQ0_9ROSI	V4S761	V4UUQ0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.617
V4TK88_9ROSI	V4S3Y2_9ROSI	V4TK88	V4S3Y2	Uncharacterized protein.	Uncharacterized protein.	0.770
V4TK88_9ROSI	V4S761_9ROSI	V4TK88	V4S761	Uncharacterized protein.	Uncharacterized protein.	0.450
V4TK88_9ROSI	V4UFS7_9ROSI	V4TK88	V4UFS7	Uncharacterized protein.	Uncharacterized protein.	0.902
V4TTR8_9ROSI	V4S3Y2_9ROSI	V4TTR8	V4S3Y2	PCI domain-containing protein.	Uncharacterized protein.	0.656