V4SN17_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4SN17_9ROSI

Uncharacterized protein. (405 aa)

Predicted Functional Partners:

V4SMQ7_9ROSI

0.473

V4VY98_9ROSI

0.472

V4S2M3_9ROSI

0.462

V4TP52_9ROSI

0.455

V4V7F2_9ROSI

0.442

V4UJ93_9ROSI

0.439

V4T6H7_9ROSI

0.437

V4VJS2_9ROSI

0.436

V4SHD6_9ROSI

0.430

V4RSW4_9ROSI

0.417

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RSW4_9ROSI	V4SN17_9ROSI	V4RSW4	V4SN17	LEA_2 domain-containing protein.	Uncharacterized protein.	0.417
V4S2M3_9ROSI	V4SMQ7_9ROSI	V4S2M3	V4SMQ7	RING-type domain-containing protein.	Uncharacterized protein.	0.471
V4S2M3_9ROSI	V4SN17_9ROSI	V4S2M3	V4SN17	RING-type domain-containing protein.	Uncharacterized protein.	0.462
V4S2M3_9ROSI	V4UJ93_9ROSI	V4S2M3	V4UJ93	RING-type domain-containing protein.	Uncharacterized protein.	0.429
V4S2M3_9ROSI	V4VJS2_9ROSI	V4S2M3	V4VJS2	RING-type domain-containing protein.	Uncharacterized protein.	0.419
V4SHD6_9ROSI	V4SN17_9ROSI	V4SHD6	V4SN17	BHLH domain-containing protein.	Uncharacterized protein.	0.430
V4SHD6_9ROSI	V4TP52_9ROSI	V4SHD6	V4TP52	BHLH domain-containing protein.	Uncharacterized protein.	0.517
V4SHD6_9ROSI	V4UJ93_9ROSI	V4SHD6	V4UJ93	BHLH domain-containing protein.	Uncharacterized protein.	0.407
V4SHD6_9ROSI	V4VJS2_9ROSI	V4SHD6	V4VJS2	BHLH domain-containing protein.	Uncharacterized protein.	0.516
V4SHD6_9ROSI	V4VY98_9ROSI	V4SHD6	V4VY98	BHLH domain-containing protein.	Uncharacterized protein.	0.438
V4SMQ7_9ROSI	V4S2M3_9ROSI	V4SMQ7	V4S2M3	Uncharacterized protein.	RING-type domain-containing protein.	0.471
V4SMQ7_9ROSI	V4SN17_9ROSI	V4SMQ7	V4SN17	Uncharacterized protein.	Uncharacterized protein.	0.473
V4SMQ7_9ROSI	V4T6H7_9ROSI	V4SMQ7	V4T6H7	Uncharacterized protein.	Lectin_legB domain-containing protein; Belongs to the leguminous lectin family.	0.422
V4SN17_9ROSI	V4RSW4_9ROSI	V4SN17	V4RSW4	Uncharacterized protein.	LEA_2 domain-containing protein.	0.417
V4SN17_9ROSI	V4S2M3_9ROSI	V4SN17	V4S2M3	Uncharacterized protein.	RING-type domain-containing protein.	0.462
V4SN17_9ROSI	V4SHD6_9ROSI	V4SN17	V4SHD6	Uncharacterized protein.	BHLH domain-containing protein.	0.430
V4SN17_9ROSI	V4SMQ7_9ROSI	V4SN17	V4SMQ7	Uncharacterized protein.	Uncharacterized protein.	0.473
V4SN17_9ROSI	V4T6H7_9ROSI	V4SN17	V4T6H7	Uncharacterized protein.	Lectin_legB domain-containing protein; Belongs to the leguminous lectin family.	0.437
V4SN17_9ROSI	V4TP52_9ROSI	V4SN17	V4TP52	Uncharacterized protein.	Uncharacterized protein.	0.455
V4SN17_9ROSI	V4UJ93_9ROSI	V4SN17	V4UJ93	Uncharacterized protein.	Uncharacterized protein.	0.439