V4TWF0_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4TWF0_9ROSI

NAC domain-containing protein. (327 aa)

Predicted Functional Partners:

V4U241_9ROSI

0.508

V4T5V3_9ROSI

0.506

V4S2P3_9ROSI

0.504

V4SFJ4_9ROSI

0.490

V4UMV4_9ROSI

0.485

V4UAY4_9ROSI

0.484

V4TL59_9ROSI

0.481

V4S946_9ROSI

0.474

V4TR08_9ROSI

0.471

V4SHP5_9ROSI

0.469

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4S2P3_9ROSI	V4S946_9ROSI	V4S2P3	V4S946	MADS-box domain-containing protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.456
V4S2P3_9ROSI	V4SHP5_9ROSI	V4S2P3	V4SHP5	MADS-box domain-containing protein.	N-acetyltransferase domain-containing protein.	0.421
V4S2P3_9ROSI	V4T5V3_9ROSI	V4S2P3	V4T5V3	MADS-box domain-containing protein.	Uncharacterized protein.	0.434
V4S2P3_9ROSI	V4TR08_9ROSI	V4S2P3	V4TR08	MADS-box domain-containing protein.	Uncharacterized protein.	0.520
V4S2P3_9ROSI	V4TWF0_9ROSI	V4S2P3	V4TWF0	MADS-box domain-containing protein.	NAC domain-containing protein.	0.504
V4S2P3_9ROSI	V4UMV4_9ROSI	V4S2P3	V4UMV4	MADS-box domain-containing protein.	KIX_2 domain-containing protein.	0.513
V4S946_9ROSI	V4S2P3_9ROSI	V4S946	V4S2P3	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	MADS-box domain-containing protein.	0.456
V4S946_9ROSI	V4SFJ4_9ROSI	V4S946	V4SFJ4	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Protein kinase domain-containing protein.	0.420
V4S946_9ROSI	V4T5V3_9ROSI	V4S946	V4T5V3	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.501
V4S946_9ROSI	V4TR08_9ROSI	V4S946	V4TR08	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.487
V4S946_9ROSI	V4TWF0_9ROSI	V4S946	V4TWF0	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	NAC domain-containing protein.	0.474
V4S946_9ROSI	V4UMV4_9ROSI	V4S946	V4UMV4	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	KIX_2 domain-containing protein.	0.465
V4SFJ4_9ROSI	V4S946_9ROSI	V4SFJ4	V4S946	Protein kinase domain-containing protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.420
V4SFJ4_9ROSI	V4TR08_9ROSI	V4SFJ4	V4TR08	Protein kinase domain-containing protein.	Uncharacterized protein.	0.424
V4SFJ4_9ROSI	V4TWF0_9ROSI	V4SFJ4	V4TWF0	Protein kinase domain-containing protein.	NAC domain-containing protein.	0.490
V4SFJ4_9ROSI	V4UAY4_9ROSI	V4SFJ4	V4UAY4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.446
V4SFJ4_9ROSI	V4UMV4_9ROSI	V4SFJ4	V4UMV4	Protein kinase domain-containing protein.	KIX_2 domain-containing protein.	0.421
V4SHP5_9ROSI	V4S2P3_9ROSI	V4SHP5	V4S2P3	N-acetyltransferase domain-containing protein.	MADS-box domain-containing protein.	0.421
V4SHP5_9ROSI	V4TWF0_9ROSI	V4SHP5	V4TWF0	N-acetyltransferase domain-containing protein.	NAC domain-containing protein.	0.469
V4T5V3_9ROSI	V4S2P3_9ROSI	V4T5V3	V4S2P3	Uncharacterized protein.	MADS-box domain-containing protein.	0.434