V4VN00_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4VN00_9ROSI

Uncharacterized protein. (1101 aa)

Predicted Functional Partners:

V4S1D1_9ROSI

0.868

V4UAJ9_9ROSI

0.701

V4SQH9_9ROSI

0.656

V4RZM7_9ROSI

0.645

V4TA42_9ROSI

0.645

V4TCL3_9ROSI

0.645

V4UF79_9ROSI

0.645

V4RLB2_9ROSI

0.643

V4T3N8_9ROSI

0.643

V4TQF8_9ROSI

0.643

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RLB2_9ROSI	V4RZM7_9ROSI	V4RLB2	V4RZM7	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.987
V4RLB2_9ROSI	V4S1D1_9ROSI	V4RLB2	V4S1D1	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Peptidylprolyl isomerase.	0.677
V4RLB2_9ROSI	V4SQH9_9ROSI	V4RLB2	V4SQH9	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	KOW domain-containing protein.	0.990
V4RLB2_9ROSI	V4TA42_9ROSI	V4RLB2	V4TA42	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.987
V4RLB2_9ROSI	V4TCL3_9ROSI	V4RLB2	V4TCL3	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.967
V4RLB2_9ROSI	V4TQF8_9ROSI	V4RLB2	V4TQF8	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.987
V4RLB2_9ROSI	V4UAJ9_9ROSI	V4RLB2	V4UAJ9	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Ribosomal_L18_c domain-containing protein.	0.993
V4RLB2_9ROSI	V4UF79_9ROSI	V4RLB2	V4UF79	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.967
V4RLB2_9ROSI	V4VN00_9ROSI	V4RLB2	V4VN00	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.643
V4RZM7_9ROSI	V4RLB2_9ROSI	V4RZM7	V4RLB2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.987
V4RZM7_9ROSI	V4S1D1_9ROSI	V4RZM7	V4S1D1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Peptidylprolyl isomerase.	0.819
V4RZM7_9ROSI	V4SQH9_9ROSI	V4RZM7	V4SQH9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	KOW domain-containing protein.	0.992
V4RZM7_9ROSI	V4T3N8_9ROSI	V4RZM7	V4T3N8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.987
V4RZM7_9ROSI	V4TA42_9ROSI	V4RZM7	V4TA42	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.900
V4RZM7_9ROSI	V4TCL3_9ROSI	V4RZM7	V4TCL3	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.974
V4RZM7_9ROSI	V4TQF8_9ROSI	V4RZM7	V4TQF8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.988
V4RZM7_9ROSI	V4UAJ9_9ROSI	V4RZM7	V4UAJ9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L18_c domain-containing protein.	0.995
V4RZM7_9ROSI	V4UF79_9ROSI	V4RZM7	V4UF79	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.974
V4RZM7_9ROSI	V4VN00_9ROSI	V4RZM7	V4VN00	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.645
V4S1D1_9ROSI	V4RLB2_9ROSI	V4S1D1	V4RLB2	Peptidylprolyl isomerase.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.677