STRINGSTRING
V4T8H1_9ROSI V4T8H1_9ROSI V4UKI4_9ROSI V4UKI4_9ROSI V4VV39_9ROSI V4VV39_9ROSI V4TNZ9_9ROSI V4TNZ9_9ROSI V4UPG6_9ROSI V4UPG6_9ROSI V4U1X2_9ROSI V4U1X2_9ROSI V4SSU7_9ROSI V4SSU7_9ROSI V4U4D5_9ROSI V4U4D5_9ROSI V4U1H2_9ROSI V4U1H2_9ROSI V4UDT4_9ROSI V4UDT4_9ROSI V4U4W7_9ROSI V4U4W7_9ROSI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4T8H1_9ROSINAC domain-containing protein. (387 aa)    
Predicted Functional Partners:
V4UKI4_9ROSI
XET_C domain-containing protein.
  
 
  0.520
V4VV39_9ROSI
C2H2-type domain-containing protein.
  
   0.518
V4TNZ9_9ROSI
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
   0.516
V4UPG6_9ROSI
Uncharacterized protein.
  
  
  0.515
V4U1X2_9ROSI
AAI domain-containing protein; Belongs to the plant LTP family.
  
 
  0.508
V4SSU7_9ROSI
F-box domain-containing protein.
  
 
   0.504
V4U4D5_9ROSI
HTH myb-type domain-containing protein.
  
     0.504
V4U1H2_9ROSI
GH16 domain-containing protein.
  
 
  0.503
V4UDT4_9ROSI
AvrRpt-cleavage domain-containing protein.
  
     0.503
V4U4W7_9ROSI
OBERON-like protein; Probable transcription factor.
  
     0.501
Your Current Organism:
Citrus clementina
NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine
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