A0A067GFN9 protein (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A067GFN9

LOB domain-containing protein. (167 aa)

Predicted Functional Partners:

A0A067DQR6

0.523

A0A067F4N8

0.523

A0A067GKK2

0.522

A0A067DGT7

0.521

A0A067ESE2

0.519

A0A067FQ54

0.516

A0A067FUJ3

0.515

A0A067DUA4

0.513

A0A067FTU5

0.511

A0A067DB90

0.510

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067DB90	A0A067DGT7	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A067DB90	A0A067DQR6	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A067DB90	A0A067DUA4	Uncharacterized protein.	Neprosin domain-containing protein.	0.540
A0A067DB90	A0A067ESE2	Uncharacterized protein.	Uncharacterized protein.	0.470
A0A067DB90	A0A067F4N8	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A067DB90	A0A067FQ54	Uncharacterized protein.	Uncharacterized protein.	0.470
A0A067DB90	A0A067FTU5	Uncharacterized protein.	zf-C3HC4 domain-containing protein.	0.539
A0A067DB90	A0A067FUJ3	Uncharacterized protein.	Ammonium_transp domain-containing protein.	0.542
A0A067DB90	A0A067GFN9	Uncharacterized protein.	LOB domain-containing protein.	0.510
A0A067DB90	A0A067GKK2	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A067DGT7	A0A067DB90	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A067DGT7	A0A067DUA4	Uncharacterized protein.	Neprosin domain-containing protein.	0.484
A0A067DGT7	A0A067ESE2	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A067DGT7	A0A067F4N8	Uncharacterized protein.	Uncharacterized protein.	0.538
A0A067DGT7	A0A067FQ54	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A067DGT7	A0A067FTU5	Uncharacterized protein.	zf-C3HC4 domain-containing protein.	0.522
A0A067DGT7	A0A067FUJ3	Uncharacterized protein.	Ammonium_transp domain-containing protein.	0.509
A0A067DGT7	A0A067GFN9	Uncharacterized protein.	LOB domain-containing protein.	0.521
A0A067DGT7	A0A067GKK2	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A067DQR6	A0A067DB90	Uncharacterized protein.	Uncharacterized protein.	0.515