A0A067F688 protein (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A067F688

LOB domain-containing protein. (294 aa)

Predicted Functional Partners:

A0A067F4E6

0.528

A0A067DNS6

0.477

A0A067F271

0.475

A0A067GV08

0.460

A0A067GG25

0.448

A0A067EAK7

0.445

A0A067GDC8

0.438

A0A067GRJ6

0.428

A0A067DIT3

0.417

A0A067G0F1

0.415

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067DIT3	A0A067F688	Uncharacterized protein.	LOB domain-containing protein.	0.417
A0A067DIT3	A0A067GG25	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A067DIT3	A0A067GV08	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A067DNS6	A0A067F688	Uncharacterized protein.	LOB domain-containing protein.	0.477
A0A067EAK7	A0A067F688	Uncharacterized protein.	LOB domain-containing protein.	0.445
A0A067EAK7	A0A067GDC8	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A067F271	A0A067F688	NAC domain-containing protein.	LOB domain-containing protein.	0.475
A0A067F271	A0A067GG25	NAC domain-containing protein.	Uncharacterized protein.	0.418
A0A067F4E6	A0A067F688	Uncharacterized protein.	LOB domain-containing protein.	0.528
A0A067F688	A0A067DIT3	LOB domain-containing protein.	Uncharacterized protein.	0.417
A0A067F688	A0A067DNS6	LOB domain-containing protein.	Uncharacterized protein.	0.477
A0A067F688	A0A067EAK7	LOB domain-containing protein.	Uncharacterized protein.	0.445
A0A067F688	A0A067F271	LOB domain-containing protein.	NAC domain-containing protein.	0.475
A0A067F688	A0A067F4E6	LOB domain-containing protein.	Uncharacterized protein.	0.528
A0A067F688	A0A067G0F1	LOB domain-containing protein.	C2H2-type domain-containing protein.	0.415
A0A067F688	A0A067GDC8	LOB domain-containing protein.	Uncharacterized protein.	0.438
A0A067F688	A0A067GG25	LOB domain-containing protein.	Uncharacterized protein.	0.448
A0A067F688	A0A067GRJ6	LOB domain-containing protein.	BHLH domain-containing protein.	0.428
A0A067F688	A0A067GV08	LOB domain-containing protein.	Uncharacterized protein.	0.460
A0A067G0F1	A0A067F688	C2H2-type domain-containing protein.	LOB domain-containing protein.	0.415