V7AT00_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7AT00_PHAVU

BZIP domain-containing protein. (137 aa)

Predicted Functional Partners:

V7BN87_PHAVU

0.512

V7AW14_PHAVU

0.511

V7AME6_PHAVU

0.510

V7BUS2_PHAVU

0.509

V7BS49_PHAVU

0.506

V7AHH7_PHAVU

0.505

V7ASW3_PHAVU

0.503

V7B032_PHAVU

0.503

V7B661_PHAVU

0.502

V7CAF6_PHAVU

0.501

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7AHH7_PHAVU	V7AME6_PHAVU	V7AHH7	V7AME6	LOB domain-containing protein.	Uncharacterized protein.	0.447
V7AHH7_PHAVU	V7ASW3_PHAVU	V7AHH7	V7ASW3	LOB domain-containing protein.	C2H2-type domain-containing protein.	0.486
V7AHH7_PHAVU	V7AT00_PHAVU	V7AHH7	V7AT00	LOB domain-containing protein.	BZIP domain-containing protein.	0.505
V7AHH7_PHAVU	V7AW14_PHAVU	V7AHH7	V7AW14	LOB domain-containing protein.	C2H2-type domain-containing protein.	0.493
V7AHH7_PHAVU	V7B032_PHAVU	V7AHH7	V7B032	LOB domain-containing protein.	Uncharacterized protein.	0.479
V7AHH7_PHAVU	V7BN87_PHAVU	V7AHH7	V7BN87	LOB domain-containing protein.	Uncharacterized protein.	0.494
V7AHH7_PHAVU	V7BS49_PHAVU	V7AHH7	V7BS49	LOB domain-containing protein.	C2H2-type domain-containing protein.	0.462
V7AHH7_PHAVU	V7BUS2_PHAVU	V7AHH7	V7BUS2	LOB domain-containing protein.	C2H2-type domain-containing protein.	0.462
V7AHH7_PHAVU	V7CAF6_PHAVU	V7AHH7	V7CAF6	LOB domain-containing protein.	C2H2-type domain-containing protein.	0.505
V7AME6_PHAVU	V7AHH7_PHAVU	V7AME6	V7AHH7	Uncharacterized protein.	LOB domain-containing protein.	0.447
V7AME6_PHAVU	V7ASW3_PHAVU	V7AME6	V7ASW3	Uncharacterized protein.	C2H2-type domain-containing protein.	0.521
V7AME6_PHAVU	V7AT00_PHAVU	V7AME6	V7AT00	Uncharacterized protein.	BZIP domain-containing protein.	0.510
V7AME6_PHAVU	V7AW14_PHAVU	V7AME6	V7AW14	Uncharacterized protein.	C2H2-type domain-containing protein.	0.525
V7AME6_PHAVU	V7B032_PHAVU	V7AME6	V7B032	Uncharacterized protein.	Uncharacterized protein.	0.404
V7AME6_PHAVU	V7BN87_PHAVU	V7AME6	V7BN87	Uncharacterized protein.	Uncharacterized protein.	0.508
V7AME6_PHAVU	V7BS49_PHAVU	V7AME6	V7BS49	Uncharacterized protein.	C2H2-type domain-containing protein.	0.529
V7AME6_PHAVU	V7BUS2_PHAVU	V7AME6	V7BUS2	Uncharacterized protein.	C2H2-type domain-containing protein.	0.531
V7ASW3_PHAVU	V7AHH7_PHAVU	V7ASW3	V7AHH7	C2H2-type domain-containing protein.	LOB domain-containing protein.	0.486
V7ASW3_PHAVU	V7AME6_PHAVU	V7ASW3	V7AME6	C2H2-type domain-containing protein.	Uncharacterized protein.	0.521
V7ASW3_PHAVU	V7AT00_PHAVU	V7ASW3	V7AT00	C2H2-type domain-containing protein.	BZIP domain-containing protein.	0.503