V7B7U7_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7B7U7_PHAVU

NAC domain-containing protein. (650 aa)

Predicted Functional Partners:

V7C4C0_PHAVU

0.486

V7BJR3_PHAVU

0.475

V7B809_PHAVU

0.467

V7CE54_PHAVU

0.461

V7CMN9_PHAVU

0.460

V7AN87_PHAVU

0.458

V7BZR6_PHAVU

0.454

V7CF81_PHAVU

0.454

V7BSU4_PHAVU

0.453

V7AMN5_PHAVU

0.452

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7AMN5_PHAVU	V7B7U7_PHAVU	V7AMN5	V7B7U7	Bulb-type lectin domain-containing protein.	NAC domain-containing protein.	0.452
V7AMN5_PHAVU	V7BJR3_PHAVU	V7AMN5	V7BJR3	Bulb-type lectin domain-containing protein.	Uncharacterized protein.	0.415
V7AMN5_PHAVU	V7CF81_PHAVU	V7AMN5	V7CF81	Bulb-type lectin domain-containing protein.	TCP domain-containing protein.	0.410
V7AN87_PHAVU	V7B7U7_PHAVU	V7AN87	V7B7U7	GRAS domain-containing protein; Belongs to the GRAS family.	NAC domain-containing protein.	0.458
V7AN87_PHAVU	V7CMN9_PHAVU	V7AN87	V7CMN9	GRAS domain-containing protein; Belongs to the GRAS family.	Uncharacterized protein.	0.421
V7B7U7_PHAVU	V7AMN5_PHAVU	V7B7U7	V7AMN5	NAC domain-containing protein.	Bulb-type lectin domain-containing protein.	0.452
V7B7U7_PHAVU	V7AN87_PHAVU	V7B7U7	V7AN87	NAC domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.458
V7B7U7_PHAVU	V7B809_PHAVU	V7B7U7	V7B809	NAC domain-containing protein.	NAC domain-containing protein.	0.467
V7B7U7_PHAVU	V7BJR3_PHAVU	V7B7U7	V7BJR3	NAC domain-containing protein.	Uncharacterized protein.	0.475
V7B7U7_PHAVU	V7BSU4_PHAVU	V7B7U7	V7BSU4	NAC domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.453
V7B7U7_PHAVU	V7BZR6_PHAVU	V7B7U7	V7BZR6	NAC domain-containing protein.	Auxin-induced protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.454
V7B7U7_PHAVU	V7C4C0_PHAVU	V7B7U7	V7C4C0	NAC domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.486
V7B7U7_PHAVU	V7CE54_PHAVU	V7B7U7	V7CE54	NAC domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.461
V7B7U7_PHAVU	V7CF81_PHAVU	V7B7U7	V7CF81	NAC domain-containing protein.	TCP domain-containing protein.	0.454
V7B7U7_PHAVU	V7CMN9_PHAVU	V7B7U7	V7CMN9	NAC domain-containing protein.	Uncharacterized protein.	0.460
V7B809_PHAVU	V7B7U7_PHAVU	V7B809	V7B7U7	NAC domain-containing protein.	NAC domain-containing protein.	0.467
V7B809_PHAVU	V7BJR3_PHAVU	V7B809	V7BJR3	NAC domain-containing protein.	Uncharacterized protein.	0.444
V7B809_PHAVU	V7C4C0_PHAVU	V7B809	V7C4C0	NAC domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.485
V7B809_PHAVU	V7CMN9_PHAVU	V7B809	V7CMN9	NAC domain-containing protein.	Uncharacterized protein.	0.402
V7BJR3_PHAVU	V7AMN5_PHAVU	V7BJR3	V7AMN5	Uncharacterized protein.	Bulb-type lectin domain-containing protein.	0.415