V7C8I6_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7C8I6_PHAVU

BHLH domain-containing protein. (330 aa)

Predicted Functional Partners:

V7ASX2_PHAVU

0.628

V7CY08_PHAVU

0.628

V7D164_PHAVU

0.628

V7C7J6_PHAVU

0.563

V7CFQ6_PHAVU

0.519

V7AI53_PHAVU

0.515

V7BCQ5_PHAVU

0.515

V7BKC1_PHAVU

0.515

V7CG55_PHAVU

0.441

V7CIN8_PHAVU

0.441

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7AI53_PHAVU	V7C8I6_PHAVU	V7AI53	V7C8I6	Uncharacterized protein.	BHLH domain-containing protein.	0.515
V7ASX2_PHAVU	V7C8I6_PHAVU	V7ASX2	V7C8I6	WD_REPEATS_REGION domain-containing protein.	BHLH domain-containing protein.	0.628
V7BCQ5_PHAVU	V7C8I6_PHAVU	V7BCQ5	V7C8I6	Uncharacterized protein.	BHLH domain-containing protein.	0.515
V7BKC1_PHAVU	V7C8I6_PHAVU	V7BKC1	V7C8I6	Uncharacterized protein.	BHLH domain-containing protein.	0.515
V7C7J6_PHAVU	V7C8I6_PHAVU	V7C7J6	V7C8I6	Uncharacterized protein.	BHLH domain-containing protein.	0.563
V7C8I6_PHAVU	V7AI53_PHAVU	V7C8I6	V7AI53	BHLH domain-containing protein.	Uncharacterized protein.	0.515
V7C8I6_PHAVU	V7ASX2_PHAVU	V7C8I6	V7ASX2	BHLH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.628
V7C8I6_PHAVU	V7BCQ5_PHAVU	V7C8I6	V7BCQ5	BHLH domain-containing protein.	Uncharacterized protein.	0.515
V7C8I6_PHAVU	V7BKC1_PHAVU	V7C8I6	V7BKC1	BHLH domain-containing protein.	Uncharacterized protein.	0.515
V7C8I6_PHAVU	V7C7J6_PHAVU	V7C8I6	V7C7J6	BHLH domain-containing protein.	Uncharacterized protein.	0.563
V7C8I6_PHAVU	V7CFQ6_PHAVU	V7C8I6	V7CFQ6	BHLH domain-containing protein.	Peptidyl-prolyl cis-trans isomerase.	0.519
V7C8I6_PHAVU	V7CG55_PHAVU	V7C8I6	V7CG55	BHLH domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.441
V7C8I6_PHAVU	V7CIN8_PHAVU	V7C8I6	V7CIN8	BHLH domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.441
V7C8I6_PHAVU	V7CY08_PHAVU	V7C8I6	V7CY08	BHLH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.628
V7C8I6_PHAVU	V7D164_PHAVU	V7C8I6	V7D164	BHLH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.628
V7CFQ6_PHAVU	V7C8I6_PHAVU	V7CFQ6	V7C8I6	Peptidyl-prolyl cis-trans isomerase.	BHLH domain-containing protein.	0.519
V7CG55_PHAVU	V7C8I6_PHAVU	V7CG55	V7C8I6	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	BHLH domain-containing protein.	0.441
V7CG55_PHAVU	V7CIN8_PHAVU	V7CG55	V7CIN8	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.900
V7CIN8_PHAVU	V7C8I6_PHAVU	V7CIN8	V7C8I6	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	BHLH domain-containing protein.	0.441
V7CIN8_PHAVU	V7CG55_PHAVU	V7CIN8	V7CG55	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.900