V7CB84_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7CB84_PHAVU

BHLH domain-containing protein. (196 aa)

Predicted Functional Partners:

V7B700_PHAVU

0.525

V7BFI0_PHAVU

0.513

V7B2J9_PHAVU

0.497

V7CGV9_PHAVU

0.495

V7CBS9_PHAVU

0.486

V7CZP9_PHAVU

0.484

PHAVU_L011300g

0.483

V7AM59_PHAVU

0.478

V7C7M1_PHAVU

0.478

V7C2K7_PHAVU

0.475

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHAVU_L011300g	V7AM59_PHAVU	V7D0F2	V7AM59	Uncharacterized protein.	Uncharacterized protein.	0.464
PHAVU_L011300g	V7B2J9_PHAVU	V7D0F2	V7B2J9	Uncharacterized protein.	Uncharacterized protein.	0.494
PHAVU_L011300g	V7B700_PHAVU	V7D0F2	V7B700	Uncharacterized protein.	Uncharacterized protein.	0.449
PHAVU_L011300g	V7BFI0_PHAVU	V7D0F2	V7BFI0	Uncharacterized protein.	Uncharacterized protein.	0.521
PHAVU_L011300g	V7CB84_PHAVU	V7D0F2	V7CB84	Uncharacterized protein.	BHLH domain-containing protein.	0.483
PHAVU_L011300g	V7CGV9_PHAVU	V7D0F2	V7CGV9	Uncharacterized protein.	Uncharacterized protein.	0.433
PHAVU_L011300g	V7CZP9_PHAVU	V7D0F2	V7CZP9	Uncharacterized protein.	Uncharacterized protein.	0.504
V7AM59_PHAVU	PHAVU_L011300g	V7AM59	V7D0F2	Uncharacterized protein.	Uncharacterized protein.	0.464
V7AM59_PHAVU	V7B700_PHAVU	V7AM59	V7B700	Uncharacterized protein.	Uncharacterized protein.	0.471
V7AM59_PHAVU	V7BFI0_PHAVU	V7AM59	V7BFI0	Uncharacterized protein.	Uncharacterized protein.	0.479
V7AM59_PHAVU	V7CB84_PHAVU	V7AM59	V7CB84	Uncharacterized protein.	BHLH domain-containing protein.	0.478
V7AM59_PHAVU	V7CBS9_PHAVU	V7AM59	V7CBS9	Uncharacterized protein.	Uncharacterized protein.	0.453
V7AM59_PHAVU	V7CGV9_PHAVU	V7AM59	V7CGV9	Uncharacterized protein.	Uncharacterized protein.	0.462
V7AM59_PHAVU	V7CZP9_PHAVU	V7AM59	V7CZP9	Uncharacterized protein.	Uncharacterized protein.	0.499
V7B2J9_PHAVU	PHAVU_L011300g	V7B2J9	V7D0F2	Uncharacterized protein.	Uncharacterized protein.	0.494
V7B2J9_PHAVU	V7B700_PHAVU	V7B2J9	V7B700	Uncharacterized protein.	Uncharacterized protein.	0.450
V7B2J9_PHAVU	V7BFI0_PHAVU	V7B2J9	V7BFI0	Uncharacterized protein.	Uncharacterized protein.	0.503
V7B2J9_PHAVU	V7C7M1_PHAVU	V7B2J9	V7C7M1	Uncharacterized protein.	Uncharacterized protein.	0.469
V7B2J9_PHAVU	V7CB84_PHAVU	V7B2J9	V7CB84	Uncharacterized protein.	BHLH domain-containing protein.	0.497
V7B2J9_PHAVU	V7CBS9_PHAVU	V7B2J9	V7CBS9	Uncharacterized protein.	Uncharacterized protein.	0.419