V7CFE1_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7CFE1_PHAVU

Uncharacterized protein. (215 aa)

Predicted Functional Partners:

V7AS79_PHAVU

0.576

V7C8G3_PHAVU

0.576

V7ASX3_PHAVU

0.557

V7B718_PHAVU

0.557

V7BZY1_PHAVU

0.557

V7BXU2_PHAVU

0.464

V7BEZ4_PHAVU

0.455

V7AZ04_PHAVU

0.454

V7BKE6_PHAVU

0.454

V7BVN8_PHAVU

0.450

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V7AS79_PHAVU	V7ASX3_PHAVU	V7AS79	V7ASX3	Uncharacterized protein.	Uncharacterized protein.	0.926
V7AS79_PHAVU	V7CFE1_PHAVU	V7AS79	V7CFE1	Uncharacterized protein.	Uncharacterized protein.	0.576
V7ASX3_PHAVU	V7AS79_PHAVU	V7ASX3	V7AS79	Uncharacterized protein.	Uncharacterized protein.	0.926
V7ASX3_PHAVU	V7CFE1_PHAVU	V7ASX3	V7CFE1	Uncharacterized protein.	Uncharacterized protein.	0.557
V7AZ04_PHAVU	V7BEZ4_PHAVU	V7AZ04	V7BEZ4	Uncharacterized protein.	Uncharacterized protein.	0.501
V7AZ04_PHAVU	V7BKE6_PHAVU	V7AZ04	V7BKE6	Uncharacterized protein.	Uncharacterized protein.	0.527
V7AZ04_PHAVU	V7BVN8_PHAVU	V7AZ04	V7BVN8	Uncharacterized protein.	Uncharacterized protein.	0.528
V7AZ04_PHAVU	V7BXU2_PHAVU	V7AZ04	V7BXU2	Uncharacterized protein.	Uncharacterized protein.	0.502
V7AZ04_PHAVU	V7CFE1_PHAVU	V7AZ04	V7CFE1	Uncharacterized protein.	Uncharacterized protein.	0.454
V7B718_PHAVU	V7BZY1_PHAVU	V7B718	V7BZY1	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.921
V7B718_PHAVU	V7C8G3_PHAVU	V7B718	V7C8G3	Lactamase_B domain-containing protein.	Lactamase_B domain-containing protein.	0.902
V7B718_PHAVU	V7CFE1_PHAVU	V7B718	V7CFE1	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.557
V7BEZ4_PHAVU	V7AZ04_PHAVU	V7BEZ4	V7AZ04	Uncharacterized protein.	Uncharacterized protein.	0.501
V7BEZ4_PHAVU	V7BKE6_PHAVU	V7BEZ4	V7BKE6	Uncharacterized protein.	Uncharacterized protein.	0.517
V7BEZ4_PHAVU	V7BVN8_PHAVU	V7BEZ4	V7BVN8	Uncharacterized protein.	Uncharacterized protein.	0.514
V7BEZ4_PHAVU	V7BXU2_PHAVU	V7BEZ4	V7BXU2	Uncharacterized protein.	Uncharacterized protein.	0.541
V7BEZ4_PHAVU	V7CFE1_PHAVU	V7BEZ4	V7CFE1	Uncharacterized protein.	Uncharacterized protein.	0.455
V7BKE6_PHAVU	V7AZ04_PHAVU	V7BKE6	V7AZ04	Uncharacterized protein.	Uncharacterized protein.	0.527
V7BKE6_PHAVU	V7BEZ4_PHAVU	V7BKE6	V7BEZ4	Uncharacterized protein.	Uncharacterized protein.	0.517
V7BKE6_PHAVU	V7BXU2_PHAVU	V7BKE6	V7BXU2	Uncharacterized protein.	Uncharacterized protein.	0.510