V7CJG9_PHAVU protein (Phaseolus vulgaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V7CJG9_PHAVU

SANT domain-containing protein. (910 aa)

Predicted Functional Partners:

V7AFW1_PHAVU

0.991

V7BC56_PHAVU

0.987

V7C6F8_PHAVU

0.985

V7AKM7_PHAVU

0.984

V7AEJ3_PHAVU

0.982

V7BNG0_PHAVU

0.980

V7AP23_PHAVU

0.975

V7B0K2_PHAVU

0.975

PVTBP2

0.972

PVTBP1

0.972

Your Current Organism:

Phaseolus vulgaris

NCBI taxonomy Id: 3885
Other names: French bean, P. vulgaris, Phaseolus vulgaris L., kidney bean, string bean

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PVTBP1	PVTBP2	Q9ZTX5	Q9SAU1	TATA-box binding protein.	TATA-box binding protein.	0.900
PVTBP1	V7AEJ3_PHAVU	Q9ZTX5	V7AEJ3	TATA-box binding protein.	Uncharacterized protein.	0.808
PVTBP1	V7AFW1_PHAVU	Q9ZTX5	V7AFW1	TATA-box binding protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.887
PVTBP1	V7AKM7_PHAVU	Q9ZTX5	V7AKM7	TATA-box binding protein.	Uncharacterized protein.	0.863
PVTBP1	V7AP23_PHAVU	Q9ZTX5	V7AP23	TATA-box binding protein.	Uncharacterized protein.	0.868
PVTBP1	V7B0K2_PHAVU	Q9ZTX5	V7B0K2	TATA-box binding protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.868
PVTBP1	V7BC56_PHAVU	Q9ZTX5	V7BC56	TATA-box binding protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.897
PVTBP1	V7BNG0_PHAVU	Q9ZTX5	V7BNG0	TATA-box binding protein.	RPOLD domain-containing protein.	0.917
PVTBP1	V7C6F8_PHAVU	Q9ZTX5	V7C6F8	TATA-box binding protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.862
PVTBP1	V7CJG9_PHAVU	Q9ZTX5	V7CJG9	TATA-box binding protein.	SANT domain-containing protein.	0.972
PVTBP2	PVTBP1	Q9SAU1	Q9ZTX5	TATA-box binding protein.	TATA-box binding protein.	0.900
PVTBP2	V7AEJ3_PHAVU	Q9SAU1	V7AEJ3	TATA-box binding protein.	Uncharacterized protein.	0.808
PVTBP2	V7AFW1_PHAVU	Q9SAU1	V7AFW1	TATA-box binding protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.887
PVTBP2	V7AKM7_PHAVU	Q9SAU1	V7AKM7	TATA-box binding protein.	Uncharacterized protein.	0.863
PVTBP2	V7AP23_PHAVU	Q9SAU1	V7AP23	TATA-box binding protein.	Uncharacterized protein.	0.868
PVTBP2	V7B0K2_PHAVU	Q9SAU1	V7B0K2	TATA-box binding protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.868
PVTBP2	V7BC56_PHAVU	Q9SAU1	V7BC56	TATA-box binding protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.897
PVTBP2	V7BNG0_PHAVU	Q9SAU1	V7BNG0	TATA-box binding protein.	RPOLD domain-containing protein.	0.917
PVTBP2	V7C6F8_PHAVU	Q9SAU1	V7C6F8	TATA-box binding protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.862
PVTBP2	V7CJG9_PHAVU	Q9SAU1	V7CJG9	TATA-box binding protein.	SANT domain-containing protein.	0.972