Bathy17g02050 protein (Bathycoccus prasinos)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Bathy17g02050

WRKY domain-containing protein. (301 aa)

Predicted Functional Partners:

Bathy05g04030

0.592

Bathy02g01550

0.582

Bathy01g02260

0.459

Bathy04g01760

0.453

Bathy04g02160

0.446

Bathy10g00070

0.423

Bathy05g01260

0.420

Bathy05g03240

0.413

Bathy05g01130

0.403

Your Current Organism:

Bathycoccus prasinos

NCBI taxonomy Id: 41875
Other names: B. prasinos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bathy01g02260	Bathy17g02050	K8EAC4	K8FDL4	PHD domain-containing protein.	WRKY domain-containing protein.	0.459
Bathy02g01550	Bathy04g01760	K8EBL5	K8EUZ0	Protein kinase domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.508
Bathy02g01550	Bathy05g03240	K8EBL5	K8EEX6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.991
Bathy02g01550	Bathy05g04030	K8EBL5	K8EVN4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.708
Bathy02g01550	Bathy17g02050	K8EBL5	K8FDL4	Protein kinase domain-containing protein.	WRKY domain-containing protein.	0.582
Bathy04g01760	Bathy02g01550	K8EUZ0	K8EBL5	TYR_PHOSPHATASE_2 domain-containing protein.	Protein kinase domain-containing protein.	0.508
Bathy04g01760	Bathy04g02160	K8EUZ0	K8EUI0	TYR_PHOSPHATASE_2 domain-containing protein.	PPM-type phosphatase domain-containing protein.	0.653
Bathy04g01760	Bathy05g03240	K8EUZ0	K8EEX6	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.538
Bathy04g01760	Bathy05g04030	K8EUZ0	K8EVN4	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.630
Bathy04g01760	Bathy17g02050	K8EUZ0	K8FDL4	TYR_PHOSPHATASE_2 domain-containing protein.	WRKY domain-containing protein.	0.453
Bathy04g02160	Bathy04g01760	K8EUI0	K8EUZ0	PPM-type phosphatase domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.653
Bathy04g02160	Bathy05g03240	K8EUI0	K8EEX6	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.471
Bathy04g02160	Bathy05g04030	K8EUI0	K8EVN4	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.579
Bathy04g02160	Bathy17g02050	K8EUI0	K8FDL4	PPM-type phosphatase domain-containing protein.	WRKY domain-containing protein.	0.446
Bathy05g01130	Bathy05g03240	K8F514	K8EEX6	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.619
Bathy05g01130	Bathy17g02050	K8F514	K8FDL4	AP2/ERF domain-containing protein.	WRKY domain-containing protein.	0.403
Bathy05g01260	Bathy17g02050	K8EFM5	K8FDL4	HTH myb-type domain-containing protein.	WRKY domain-containing protein.	0.420
Bathy05g03240	Bathy02g01550	K8EEX6	K8EBL5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.991
Bathy05g03240	Bathy04g01760	K8EEX6	K8EUZ0	Uncharacterized protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.538
Bathy05g03240	Bathy04g02160	K8EEX6	K8EUI0	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.471